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dbp-2
Euk-VirSucra_jujuba_nucleopolyhedrovirus
dbp-2__YP_009186704__Sucra_jujuba_nucleopolyhedrovirus__1563660
Identity
- Accession:
- YP_009186704 ↗
- Protein ID:
- dbp-2
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Taxonomy
TaxID: 1563660
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-238_260-309
Domain cluster:
rep: ssDNA_binding_protein__YP_009118586__Condylorrhiza_vestigialis_MNPV__1592576__D101-219_236-303
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 208.4 | 1.70e-61 | 100.0% | 99.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 27.0 | 3.94e-01 | 78.2% | 96.1% |
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.57 | 16.0 | 2.43e-01 | 77.4% | 54.1% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 22.0 | 3.42e-01 | 71.6% | 87.1% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 14.0 | 2.76e-01 | 77.4% | 77.3% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.56 | 16.0 | 2.66e-01 | 81.1% | 65.5% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 29.0 | 3.47e-01 | 93.8% | 73.2% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.54 | 28.0 | 3.86e-01 | 82.3% | 99.2% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.52 | 12.0 | 2.49e-01 | 84.0% | 82.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 15.0 | 2.61e-01 | 83.5% | 75.0% |