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deoxyribonuclease

Euk-Vir

Meleagrid_alphaherpesvirus_1

deoxyribonuclease__NP_073305__Meleagrid_alphaherpesvirus_1__37108

Identity

Accession:: NP_073305 ↗
Protein ID:: deoxyribonuclease
Kingdom:: euk

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Meleagrid_alphaherpesvirus_1

TaxID: 37108

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-177

PDB

Domain cluster: rep: deoxyribonuclease__YP_009230142__Leporid_alphaherpesvirus_4__481315__D113-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	29.3	5.20e-07	95.3%	11.3%

D2 medium residues 184-206_230-282_400-444_459-521

PDB

Domain cluster: rep: Exonuclease__YP_214099__Murid_betaherpesvirus_1__10366__D221-282_429-473_511-556

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	60.2	2.20e-16	58.1%	25.4%
PF01771.24	Viral_alk_exo	58.8	5.70e-16	44.0%	15.6%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3sm4A00	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.77	58.0	5.40e-01	98.9%	63.6%
3fovA00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.67	38.0	4.91e-01	81.5%	100.0%
8d3mI01	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.64	47.0	4.57e-01	96.2%	66.7%
3h4rA00	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.57	49.0	4.64e-01	96.2%	77.6%
5mp7A02	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	29.0	3.31e-01	83.2%	64.7%
3l0aA00	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.54	48.0	4.24e-01	96.2%	69.9%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.75	70.0	5.08e-01	97.3%	62.5%
4670642	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.66	40.0	4.94e-01	83.7%	96.5%
4239378	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.65	41.0	4.90e-01	85.3%	93.5%
4670340	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.65	40.0	5.03e-01	83.2%	100.0%
4403112	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.64	41.0	4.95e-01	85.9%	95.9%
4332382	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.64	40.0	4.92e-01	84.2%	96.6%
4076693	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.64	40.0	4.91e-01	83.7%	98.3%
4066769	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.64	38.0	4.80e-01	82.1%	100.0%
4407114	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.63	41.0	4.99e-01	83.7%	100.0%
4223379	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.62	39.0	4.80e-01	83.7%	99.1%
3930108	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.62	37.0	4.60e-01	81.0%	97.3%
4103907	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.57	51.0	3.99e-01	95.7%	73.6%
4943352	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.55	51.0	4.40e-01	98.9%	86.1%
4084414	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.55	41.0	4.59e-01	83.7%	100.0%
4252779	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.55	49.0	2.99e-01	95.7%	25.0%
3486967	5104.1.1.0 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases	0.53	28.0	3.12e-01	84.8%	62.0%
4292774	2008.1.1.59 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1	0.52	42.0	3.75e-01	83.7%	82.0%

D3 medium residues 283-399_445-458

PDB

Domain cluster: rep: BGLF5__YP_010087479__Phascolarctid_gammaherpesvirus_1__2249313__D240-334_400-410

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	91.4	7.50e-26	97.0%	24.3%