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deoxyribonuclease
Euk-VirCercopithecine_alphaherpesvirus_9
deoxyribonuclease__NP_077462__Cercopithecine_alphaherpesvirus_9__35246
Identity
- Accession:
- NP_077462 ↗
- Protein ID:
- deoxyribonuclease
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Cercopithecine_alphaherpesvirus_9
TaxID: 35246
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 285-403_437-482
Domain cluster:
rep: deoxyribonuclease__YP_009137086__Human_alphaherpesvirus_1__10298__D357-507_527-540
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 85.0 | 6.60e-24 | 75.8% | 25.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.61 | 19.0 | 3.37e-01 | 93.9% | 82.0% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 30.0 | 3.10e-01 | 87.9% | 57.2% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.36e-01 | 100.0% | 77.8% |
| 7ox5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 25.0 | 3.08e-01 | 100.0% | 72.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 182718 | 2008.1.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo | 0.81 | 78.0 | 5.48e-01 | 100.0% | 41.1% |
| 3783480 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.53 | 30.0 | 3.59e-01 | 100.0% | 80.0% |
| 224981 | 11.1.1.129 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind | 0.53 | 28.0 | 3.40e-01 | 100.0% | 76.6% |
| 2453076 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.53 | 29.0 | 3.48e-01 | 100.0% | 80.4% |
| 3905758 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 24.0 | 2.84e-01 | 100.0% | 59.1% |
| 3571244 | 11.1.1.1288 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28842 | 0.51 | 25.0 | 2.61e-01 | 100.0% | 48.4% |
D2
medium
residues 176-202_215-284_404-436
Domain cluster:
rep: deoxyribonuclease__YP_009342394__Spheniscid_alphaherpesvirus_1__2560777__D200-223_243-297_421-453
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 64.0 | 1.50e-17 | 75.4% | 16.5% |
| PF01771.24 | Viral_alk_exo | 29.9 | 3.50e-07 | 26.2% | 6.7% |