deoxyribonuclease

Euk-Vir

Gallid_alphaherpesvirus_2

deoxyribonuclease__YP_001033940__Gallid_alphaherpesvirus_2__10390

Identity

75.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-176

PDB

Domain cluster: rep: deoxyribonuclease__YP_009230142__Leporid_alphaherpesvirus_4__481315__D113-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	30.5	2.30e-07	95.3%	10.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fhdA01	1.20.120.860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain	0.70	57.0	5.61e-01	85.8%	86.8%
4ip8A00	1.10.132.110	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein	0.59	32.0	3.51e-01	98.4%	62.9%
1izmA00	1.20.120.740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695	0.54	40.0	3.68e-01	78.0%	80.0%
3nb2A04	1.10.4140.10	Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL)	0.51	41.0	3.73e-01	86.6%	98.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5012612	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.68	47.0	4.12e-01	72.4%	50.8%
4046472	3754.1.1.2 ↗	alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1	0.61	53.0	3.89e-01	97.6%	83.3%
3801665	4040.1.1.1 ↗	alpha bundles › Fic-like › Fic-like › Fic-like › Fic	0.56	30.0	3.19e-01	98.4%	58.2%
3373039	192.17.1.0 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like	0.55	39.0	4.13e-01	99.2%	80.9%

D2 medium residues 191-215_231-283_403-492

PDB

Domain cluster: rep: Exonuclease__YP_214099__Murid_betaherpesvirus_1__10366__D221-282_429-473_511-556

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	74.3	1.20e-20	61.9%	21.7%
PF01771.24	Viral_alk_exo	52.6	4.40e-14	47.6%	15.0%

D3 medium residues 284-402

PDB

Domain cluster: rep: BGLF5__YP_010087479__Phascolarctid_gammaherpesvirus_1__2249313__D240-334_400-410

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	91.9	5.40e-26	97.5%	24.3%