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deoxyribonuclease
Euk-VirSaimiriine_betaherpesvirus_4
deoxyribonuclease__YP_004940260__Saimiriine_betaherpesvirus_4__1535247
Identity
- Accession:
- YP_004940260 ↗
- Protein ID:
- deoxyribonuclease
- Kingdom:
- euk
Quality
88.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Saimiriine_betaherpesvirus_4
TaxID: 1535247
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-149
Domain cluster:
rep: GP98__YP_007417864__Caviid_betaherpesvirus_2__33706__D55-187
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 39.7 | 3.60e-10 | 95.9% | 24.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.76 | 58.0 | 6.07e-01 | 100.0% | 85.3% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.58 | 42.0 | 4.15e-01 | 73.5% | 100.0% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 40.0 | 3.37e-01 | 72.8% | 58.5% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 30.0 | 3.63e-01 | 76.9% | 87.0% |
| 7qoaA01 | 1.10.4160.10 | Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease | 0.52 | 44.0 | 3.30e-01 | 93.2% | 86.7% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.51 | 30.0 | 3.47e-01 | 95.9% | 81.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3724321 | 6155.1.1.5 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › ER_lumen_recept | 0.56 | 44.0 | 3.91e-01 | 82.3% | 77.6% |
| 3461781 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.54 | 44.0 | 3.54e-01 | 86.4% | 79.3% |
| 3546868 | 5059.1.1.16 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F | 0.54 | 43.0 | 3.33e-01 | 85.0% | 72.6% |
| 3711973 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.54 | 44.0 | 3.48e-01 | 87.1% | 73.4% |
| 4013535 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.52 | 42.0 | 3.26e-01 | 87.1% | 91.9% |
| 3979099 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.52 | 24.0 | 2.39e-01 | 70.1% | 36.8% |
D2
medium
residues 153-181_490-529
Domain cluster:
rep: deoxyribonuclease__YP_004940114__Aotine_betaherpesvirus_1__50290__D153-180_497-536
D3
medium
residues 182-256_390-455
Domain cluster:
rep: Exonuclease__YP_214099__Murid_betaherpesvirus_1__10366__D221-282_429-473_511-556
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 81.7 | 6.80e-23 | 54.6% | 16.3% |
| PF01771.24 | Viral_alk_exo | 65.8 | 4.30e-18 | 46.8% | 12.8% |
D4
medium
residues 257-352_456-489
Domain cluster:
rep: BGLF5__YP_010087479__Phascolarctid_gammaherpesvirus_1__2249313__D240-334_400-410
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 87.8 | 9.70e-25 | 81.5% | 22.6% |