deoxyribonuclease

Euk-Vir

Elephant_endotheliotropic_herpesvirus_5

deoxyribonuclease__YP_009051981__Elephant_endotheliotropic_herpesvirus_5__768738

Identity

87.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_5

TaxID: 768738

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-169_459-476

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	32.3	6.50e-08	79.6%	20.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fhdA01	1.20.120.860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain	0.74	51.0	5.65e-01	70.7%	92.6%
2yhsA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.52	27.0	3.42e-01	84.4%	83.5%

D2 medium residues 170-271_324-458

PDB

Domain cluster: rep: deoxyribonuclease__YP_443858__Papiine_alphaherpesvirus_2__340907__D355-603

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	92.3	4.00e-26	62.0%	27.8%
PF01771.24	Viral_alk_exo	67.4	1.40e-18	43.0%	18.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hzmG01	3.30.310.180	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein ›	0.53	20.0	2.84e-01	86.5%	68.7%
8afoA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	15.0	2.40e-01	80.6%	62.5%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.81	78.0	6.15e-01	100.0%	61.1%
4397425	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.74	36.0	5.19e-01	88.6%	100.0%
3628154	2008.1.1.91 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C	0.61	36.0	3.27e-01	100.0%	42.8%
3575010	11.1.1.236 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig	0.55	20.0	2.84e-01	72.2%	66.7%
3927968	11.1.1.9 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N	0.52	25.0	3.08e-01	75.5%	70.0%
3704983	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	26.0	3.12e-01	93.2%	69.6%
4997258	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.51	27.0	3.31e-01	92.0%	77.4%

D3 medium residues 272-323

PDB

Domain cluster: rep: deoxyribonuclease__YP_009253975__Macaca_nemestrina_herpesvirus_7__1846169__D254-310

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	20.8	2.00e-04	100.0%	11.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.79	69.0	4.01e-01	100.0%	11.9%
3939586	7512.1.1.37 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › FUT8_N_cat	0.64	51.0	3.74e-01	96.2%	81.8%
4213132	2007.1.19.2 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin	0.53	36.0	2.22e-01	75.0%	93.1%