deoxyribonuclease

Euk-Vir

Leporid_alphaherpesvirus_4

deoxyribonuclease__YP_009230142__Leporid_alphaherpesvirus_4__481315

Identity

77.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Leporid_alphaherpesvirus_4

TaxID: 481315

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-231

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	51.1	1.30e-13	99.2%	15.0%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w45A01	1.20.120.860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain	0.79	61.0	6.22e-01	80.7%	95.7%
3fhdA01	1.20.120.860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain	0.77	59.0	5.69e-01	80.7%	99.3%
4ip8A00	1.10.132.110	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein	0.61	34.0	3.63e-01	93.3%	61.9%
2bl7A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.54	35.0	4.11e-01	71.4%	98.7%
8d3mA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.53	41.0	3.31e-01	82.4%	80.8%
2xhsA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.51	45.0	3.57e-01	97.5%	86.0%
3lynB00	1.20.150.10	Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein	0.51	37.0	3.66e-01	74.8%	90.3%
3a11B01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.51	33.0	3.27e-01	100.0%	60.8%
5d6oA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.50	38.0	2.74e-01	79.8%	79.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4796295	6102.1.1.1 ↗	alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA	0.60	31.0	3.90e-01	81.5%	82.6%
3651184	4957.1.1.7 ↗	a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › MOM1	0.60	30.0	3.69e-01	77.3%	74.7%
3171196	3355.1.1.2 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › CitMHS	0.53	46.0	3.12e-01	97.5%	71.6%

D2 medium residues 247-339_404-419_454-491

PDB

Domain cluster: rep: deoxyribonuclease__YP_009342394__Spheniscid_alphaherpesvirus_1__2560777__D200-223_243-297_421-453

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	67.1	1.90e-18	72.8%	16.5%
PF01771.24	Viral_alk_exo	30.9	1.70e-07	28.6%	8.0%