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deoxyribonuclease

Euk-Vir

Bubaline_alphaherpesvirus_1

deoxyribonuclease__YP_009664668__Bubaline_alphaherpesvirus_1__202910

Identity

Accession:: YP_009664668 ↗
Protein ID:: deoxyribonuclease
Kingdom:: euk

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Bubaline_alphaherpesvirus_1

TaxID: 202910

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 215-314_328-449

PDB

Domain cluster: rep: deoxyribonuclease__YP_443858__Papiine_alphaherpesvirus_2__340907__D355-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	173.9	7.30e-51	100.0%	49.9%

D2 medium residues 23-125

PDB

Domain cluster: rep: deoxyribonuclease__YP_009230142__Leporid_alphaherpesvirus_4__481315__D113-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	35.4	7.20e-09	82.5%	10.4%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.58	34.0	4.09e-01	92.2%	93.5%
2m4eA00	1.20.120.1930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family	0.58	38.0	4.07e-01	74.8%	77.9%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.57	32.0	3.99e-01	85.4%	91.9%
4ip8A00	1.10.132.110	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein	0.56	38.0	3.78e-01	93.2%	67.6%
3ulqB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	26.0	3.34e-01	74.8%	81.0%
3lewA01	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	45.0	3.26e-01	96.1%	68.0%
2iw2A02	3.90.230.10	Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily	0.52	44.0	3.26e-01	96.1%	51.2%
2be4A03	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.52	41.0	4.34e-01	98.1%	98.9%
3otnA00	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	43.0	2.86e-01	96.1%	50.5%
5mswA01	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.51	40.0	4.27e-01	88.3%	96.7%
3godB02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.50	42.0	3.45e-01	95.1%	76.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3691381	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.58	35.0	3.99e-01	100.0%	82.7%
3829959	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.57	37.0	3.93e-01	99.0%	74.4%
3341621	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.56	36.0	3.56e-01	99.0%	60.0%
3377792	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	37.0	4.17e-01	100.0%	90.0%
3436085	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.54	36.0	3.66e-01	100.0%	68.0%
3348250	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.54	37.0	3.49e-01	100.0%	57.6%
54312	633.16.1.0 ↗	alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like	0.52	37.0	3.83e-01	74.8%	96.9%