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deoxyribonuclease
Euk-VirBeluga_whale_alphaherpesvirus_1
deoxyribonuclease__YP_010084979__Beluga_whale_alphaherpesvirus_1__1434720
Identity
- Accession:
- YP_010084979 ↗
- Protein ID:
- deoxyribonuclease
- Kingdom:
- euk
Quality
78.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Beluga_whale_alphaherpesvirus_1
TaxID: 1434720
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 81-189_512-528
Domain cluster:
rep: deoxyribonuclease__YP_009230142__Leporid_alphaherpesvirus_4__481315__D113-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 40.5 | 2.20e-10 | 69.8% | 12.6% |
D2
medium
residues 262-274_418-450
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 37.5 | 1.70e-09 | 76.1% | 6.9% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bezA02 | 3.40.1750.10 | Alpha Beta › 3-Layer(aba) Sandwich › peptide peptidase (sppa) fold › peptide peptidase (sppa) like domain | 0.54 | 42.0 | 3.28e-01 | 84.8% | 76.3% |
| 3h5xA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.51 | 43.0 | 3.43e-01 | 95.7% | 70.5% |
D3
medium
residues 388-417_451-511
Domain cluster:
rep: Alkaline_exonuclease__NP_050249__Human_betaherpesvirus_6B__32604__D328-354_396-436
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.56 | 21.0 | 2.97e-01 | 91.2% | 68.3% |
| 1k12A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 43.0 | 3.65e-01 | 90.1% | 94.9% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.49e-01 | 87.9% | 91.5% |
| 3r8qA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.29e-01 | 73.6% | 63.3% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 43.0 | 3.07e-01 | 100.0% | 66.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3565621 | 10.32.1.234 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd | 0.53 | 42.0 | 3.54e-01 | 87.9% | 68.5% |
| 3619220 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.52 | 39.0 | 3.70e-01 | 82.4% | 85.2% |
| 3879132 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.51 | 26.0 | 2.79e-01 | 78.0% | 53.3% |
| 3519333 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 39.0 | 3.36e-01 | 81.3% | 84.7% |
| 4418071 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 32.0 | 3.72e-01 | 71.4% | 94.9% |
| 3571186 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 31.0 | 3.53e-01 | 71.4% | 84.6% |