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deoxyribonuclease
Euk-VirWood_mouse_herpesvirus
deoxyribonuclease__YP_010085912__Wood_mouse_herpesvirus__432370
Identity
- Accession:
- YP_010085912 ↗
- Protein ID:
- deoxyribonuclease
- Kingdom:
- euk
Quality
89.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Wood_mouse_herpesvirus
TaxID: 432370
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-136
Domain cluster:
rep: deoxyribonuclease__YP_009551847__Rhinolophus_gammaherpesvirus_1__2054179__D9-136
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 78.2 | 7.90e-22 | 91.0% | 24.7% |
D2
high
residues 243-441
Domain cluster:
rep: deoxyribonuclease__YP_443858__Papiine_alphaherpesvirus_2__340907__D355-603
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 261.5 | 1.90e-77 | 100.0% | 43.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2as0A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.60 | 19.0 | 3.09e-01 | 99.0% | 75.7% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.50 | 18.0 | 2.74e-01 | 70.9% | 75.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 182718 | 2008.1.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo | 0.96 | 89.0 | 6.53e-01 | 100.0% | 42.2% |
| 3395104 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.70 | 25.0 | 3.02e-01 | 100.0% | 45.7% |
| 3326532 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.54 | 20.0 | 2.66e-01 | 81.9% | 58.1% |
D3
medium
residues 150-238_442-486
Domain cluster:
rep: Exonuclease__YP_214099__Murid_betaherpesvirus_1__10366__D221-282_429-473_511-556
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 89.3 | 3.20e-25 | 67.2% | 19.5% |