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deoxyribonuclease
Euk-VirCervid_alphaherpesvirus_3
deoxyribonuclease__YP_010087590__Cervid_alphaherpesvirus_3__2115790
Identity
- Accession:
- YP_010087590 ↗
- Protein ID:
- deoxyribonuclease
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Cervid_alphaherpesvirus_3
TaxID: 2115790
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 140-161_178-245_279-307_322-336_367-405
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 69.6 | 3.00e-19 | 53.8% | 16.7% |
| PF01771.24 | Viral_alk_exo | 37.8 | 1.40e-09 | 26.0% | 8.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i1tA02 | 3.30.70.2640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase | 0.64 | 33.0 | 4.56e-01 | 76.9% | 100.0% |
| 3bypA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.61 | 29.0 | 4.18e-01 | 86.1% | 97.6% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 39.0 | 4.54e-01 | 96.5% | 92.2% |
| 1oheA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 26.0 | 2.77e-01 | 89.6% | 47.0% |
| 2dhmA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.55 | 29.0 | 3.81e-01 | 75.7% | 95.6% |
| 3ux3A01 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.54 | 29.0 | 3.81e-01 | 85.5% | 93.8% |
| 4dcuA03 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 26.0 | 3.69e-01 | 84.4% | 100.0% |
| 2e8eA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 30.0 | 3.39e-01 | 78.0% | 73.5% |
| 1floA01 | 3.30.300.80 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | 0.51 | 25.0 | 3.16e-01 | 85.0% | 76.2% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 24.0 | 3.05e-01 | 99.4% | 74.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 182718 | 2008.1.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo | 0.77 | 75.0 | 5.31e-01 | 100.0% | 48.5% |
| 5003652 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 39.0 | 4.77e-01 | 98.8% | 97.4% |
| 3173774 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 30.0 | 4.21e-01 | 85.5% | 97.6% |
| 4032064 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.59 | 30.0 | 3.93e-01 | 85.5% | 87.4% |
| 3164605 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.59 | 29.0 | 4.01e-01 | 77.5% | 94.1% |
| 3596238 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.59 | 28.0 | 4.05e-01 | 75.1% | 98.8% |
| 4221181 | 327.7.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › Asp23 | 0.58 | 29.0 | 3.46e-01 | 99.4% | 67.5% |
| 5070921 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.58 | 30.0 | 4.15e-01 | 87.3% | 97.8% |
| 3958881 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 32.0 | 3.50e-01 | 88.4% | 64.1% |
| 3733223 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.57 | 30.0 | 3.82e-01 | 75.7% | 86.0% |
| 3450898 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.56 | 27.0 | 3.94e-01 | 86.1% | 100.0% |
| 3700061 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.56 | 30.0 | 4.04e-01 | 85.0% | 100.0% |
| 3964844 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.56 | 28.0 | 3.82e-01 | 78.0% | 92.2% |
| 3781316 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 31.0 | 3.69e-01 | 97.1% | 80.9% |
| 4411957 | 327.10.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NI | 0.54 | 27.0 | 3.75e-01 | 77.5% | 100.0% |
| 4988582 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 32.0 | 3.33e-01 | 87.9% | 61.3% |
| 3287861 | 327.7.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › Asp23 | 0.53 | 30.0 | 3.46e-01 | 99.4% | 75.8% |
| 5026616 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.53 | 25.0 | 3.45e-01 | 75.7% | 89.4% |
| 3592961 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 29.0 | 3.62e-01 | 78.0% | 88.5% |
| 3511342 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.52 | 27.0 | 3.59e-01 | 89.0% | 94.4% |
| 3813623 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.52 | 33.0 | 4.03e-01 | 98.8% | 100.0% |
| 4145589 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.51 | 28.0 | 3.52e-01 | 85.5% | 87.6% |
| 223513 | 315.1.1.3 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI | 0.50 | 33.0 | 3.73e-01 | 100.0% | 88.3% |
D2
medium
residues 246-278_337-366_406-456
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 182718 | 2008.1.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo | 0.80 | 75.0 | 4.87e-01 | 100.0% | 44.5% |
| 3588874 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.66 | 26.0 | 4.15e-01 | 79.8% | 90.0% |