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desmoplakin

Euk-Vir

Choristoneura_rosaceana_nucleopolyhedrovirus

desmoplakin__YP_008378437__Choristoneura_rosaceana_nucleopolyhedrovirus__58094

Identity

Accession:: YP_008378437 ↗
Protein ID:: desmoplakin
Kingdom:: euk

Quality

62.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Choristoneura_rosaceana_nucleopolyhedrovirus

TaxID: 58094

Cluster

View cluster (6 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 761-850

PDB

Domain cluster: representative

D2 medium residues 1-57

PDB

D3 medium residues 313-408

PDB

Domain cluster: representative

D4 medium residues 465-579

PDB

Domain cluster: representative

D5 medium residues 591-649

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4gc5A02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.68	53.0	4.63e-01	86.4%	77.8%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.66	49.0	4.22e-01	79.7%	52.3%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	45.0	4.19e-01	71.2%	61.1%
1k82A02	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.63	54.0	4.30e-01	96.6%	56.1%
1aoaA01	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.63	53.0	4.30e-01	100.0%	48.3%
1tdzA02	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.63	53.0	4.13e-01	96.6%	53.7%
7xrxB01	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.61	52.0	3.22e-01	98.3%	86.0%
5f1cA01	1.10.287.940	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel	0.61	41.0	4.16e-01	79.7%	69.5%
6qpqB00	1.10.10.580	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E	0.60	43.0	3.83e-01	74.6%	87.7%
4c2uA02	1.10.10.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.60	43.0	3.88e-01	76.3%	90.1%
2e9xA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	47.0	3.67e-01	93.2%	68.8%
7zhgO01	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.56	44.0	4.25e-01	86.4%	97.0%
3nymA00	6.10.290.10	Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.56	46.0	3.74e-01	96.6%	96.0%
2lklA01	1.10.1900.40	Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1	0.55	44.0	4.13e-01	89.8%	95.8%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	47.0	3.46e-01	98.3%	72.2%
4i8qA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.54	40.0	2.61e-01	84.7%	54.0%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.53	47.0	3.95e-01	100.0%	90.3%
3nvoB02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.52	43.0	3.60e-01	100.0%	87.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3672772	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.89	41.0	3.88e-01	74.6%	40.0%
3441543	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.79	71.0	5.76e-01	100.0%	91.8%
3594735	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.72	37.0	2.73e-01	91.5%	19.3%
3402309	102.2.1.0 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH	0.69	55.0	4.86e-01	88.1%	83.5%
3721853	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.64	46.0	4.43e-01	91.5%	65.7%
1159468	3352.1.1.1 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3	0.64	56.0	3.54e-01	100.0%	23.4%
3648687	604.12.1.89 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf	0.62	54.0	4.64e-01	98.3%	92.6%
3229732	6171.1.1.0 ↗	alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases	0.60	51.0	4.39e-01	100.0%	90.0%
3499119	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.55	45.0	3.02e-01	94.9%	82.2%
5050887	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	47.0	3.47e-01	98.3%	77.8%

D6 medium residues 650-760

PDB