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dna_pol

Euk-Vir

Clostera_anastomosis_granulovirus_B

dna_pol__YP_009506039__Clostera_anastomosis_granulovirus_B__1986290

Identity

Accession:
YP_009506039 ↗
Protein ID:
dna_pol
Kingdom:
euk

Quality

82.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

Cluster

View cluster (158 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 223-434
PDB
Domain cluster: rep: DNA_polymerase__YP_009118564__Condylorrhiza_vestigialis_MNPV__1592576__D196-404
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03104.26 best DNA_pol_B_exo1 77.8 1.20e-21 78.3% 67.4%
PF10108.16 DNA_pol_B_exo2 46.6 4.80e-12 77.8% 61.3%
D2 medium residues 39-222
PDB
Domain cluster: rep: DNA_polymerase__YP_010084862__Shrimp_hemocyte_iridescent_virus__2039780__D2-200
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.76 24.0 4.40e-01 73.9% 91.4%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 31.0 4.70e-01 76.1% 97.4%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.70 17.0 3.32e-01 70.1% 74.5%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.69 16.0 3.26e-01 70.1% 73.1%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 32.0 3.75e-01 79.9% 60.3%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 31.0 4.68e-01 79.9% 100.0%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 33.0 4.61e-01 81.0% 96.7%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 31.0 4.48e-01 77.2% 95.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 16.0 3.03e-01 70.1% 74.5%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 34.0 4.15e-01 82.6% 78.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 35.0 4.31e-01 81.0% 86.2%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 30.0 3.58e-01 78.8% 68.5%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 31.0 4.28e-01 79.3% 95.9%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 36.0 4.14e-01 84.2% 80.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 32.0 3.78e-01 79.9% 74.8%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.78e-01 85.9% 77.3%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.55e-01 79.3% 68.8%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 4.45e-01 85.9% 95.7%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 34.0 3.82e-01 79.9% 79.0%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.67e-01 86.4% 73.0%
1b7yB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 30.0 3.78e-01 81.0% 87.1%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 28.0 3.61e-01 77.7% 85.8%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.54 31.0 3.62e-01 79.9% 78.4%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 27.0 3.71e-01 77.2% 94.8%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 4.08e-01 85.9% 93.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4497740 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.77 24.0 4.34e-01 73.9% 86.7%
3226147 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.75 32.0 4.78e-01 77.7% 89.4%
3969569 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.74 23.0 4.21e-01 72.8% 88.3%
3389015 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 30.0 4.19e-01 73.9% 75.0%
4211209 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.71 24.0 4.04e-01 72.8% 86.2%
4277745 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 31.0 4.68e-01 77.2% 96.2%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 20.0 4.06e-01 76.1% 94.0%
4193291 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 32.0 4.54e-01 78.8% 88.9%
3826195 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.68 34.0 4.64e-01 79.9% 90.0%
4396747 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 30.0 4.45e-01 78.3% 96.2%
5073475 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 53.0 4.39e-01 83.2% 51.0%
3705696 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.66 53.0 4.92e-01 83.7% 88.3%
3236144 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 37.0 4.76e-01 83.2% 92.7%
3172086 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 33.0 4.17e-01 80.4% 80.9%
3527706 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 36.0 4.18e-01 82.1% 75.6%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 25.0 4.25e-01 70.1% 100.0%
5026267 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 26.0 4.05e-01 72.3% 93.3%
3331695 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 36.0 4.60e-01 84.8% 96.2%
5026716 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 33.0 4.22e-01 80.4% 85.5%
3239000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 36.0 4.23e-01 82.6% 80.0%
3927974 2.1.1.41 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.59 33.0 4.30e-01 79.9% 96.2%
3490309 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 35.0 4.04e-01 82.6% 80.0%
3593304 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 33.0 4.02e-01 79.9% 83.2%
4341423 2.1.1.279 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4131 0.57 34.0 4.18e-01 84.8% 91.7%
4241385 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 27.0 3.76e-01 72.3% 89.5%
3963148 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 30.0 4.05e-01 78.3% 97.0%
3738104 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.55 35.0 3.66e-01 81.5% 69.1%
4451383 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 34.0 3.78e-01 87.5% 77.2%
3948546 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 28.0 3.84e-01 70.7% 94.0%
4443040 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 28.0 3.78e-01 71.7% 91.3%
None — 0.54 35.0 3.69e-01 82.6% 71.2%
4380962 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 28.0 3.67e-01 71.2% 89.5%
4022461 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.52 37.0 3.56e-01 83.2% 64.4%
4594302 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 27.0 3.49e-01 72.3% 86.1%
3712832 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 35.0 3.68e-01 86.4% 77.6%
4026991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 34.0 3.94e-01 79.9% 92.5%
D3 medium residues 435-498_541-697
PDB
Domain cluster: rep: DNA_polymerase__YP_009182295__Diatraea_saccharalis_granulovirus__1675862__D418-475_477-636
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 75.0 7.70e-21 89.6% 38.6%
D4 medium residues 859-930
PDB
Domain cluster: rep: DNA_pol__YP_009011170__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D808-832_847-881
D5 medium residues 931-988_1027-1071
PDB
Domain cluster: rep: DNA_polymerase__YP_009330228__Plodia_interpunctella_granulovirus__262175__D792-810_893-943_995-1015