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dnahel
Euk-VirOryctes_rhinoceros_nudivirus
dnahel__YP_002321345__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321345 ↗
- Protein ID:
- dnahel
- Kingdom:
- euk
Quality
61.3
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 662-796
Domain cluster:
rep: DNAhel__YP_009553402__Tomelloso_virus__2053981__D690-820
D2
high
residues 1089-1212
Domain cluster:
rep: ACH96164.1_dnahel-like_protein__YP_009345976__Kallithea_virus__1654582__D1237-1368
D3
medium
residues 28-101
D4
medium
residues 102-220
D5
medium
residues 329-436
D6
medium
residues 499-562
D7
medium
residues 620-661_813-859
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 47.0 | 5.15e-01 | 96.6% | 88.9% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.66 | 45.0 | 4.63e-01 | 89.9% | 73.3% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 46.0 | 4.86e-01 | 84.3% | 89.9% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 40.0 | 3.83e-01 | 76.4% | 58.3% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 36.0 | 3.81e-01 | 78.7% | 66.7% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.58 | 45.0 | 4.32e-01 | 97.8% | 71.3% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.57 | 34.0 | 4.16e-01 | 87.6% | 94.7% |
| 6aveA01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.55 | 35.0 | 3.74e-01 | 88.8% | 77.0% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 33.0 | 3.09e-01 | 78.7% | 46.8% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 38.0 | 3.64e-01 | 91.0% | 60.7% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 35.0 | 3.89e-01 | 86.5% | 89.6% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 3.79e-01 | 96.6% | 78.3% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 46.0 | 3.97e-01 | 100.0% | 62.8% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 37.0 | 3.53e-01 | 89.9% | 62.3% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 35.0 | 3.43e-01 | 89.9% | 62.0% |
| 1e5rB02 | 1.10.1720.10 | Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain | 0.52 | 36.0 | 3.73e-01 | 84.3% | 77.4% |
| 1u0jA01 | 1.10.10.950 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 32.0 | 3.78e-01 | 85.4% | 100.0% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 35.0 | 3.31e-01 | 88.8% | 56.2% |
| 1dlwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 3.98e-01 | 94.4% | 97.4% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.58e-01 | 87.6% | 65.7% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.51 | 39.0 | 3.85e-01 | 91.0% | 77.2% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 35.0 | 3.69e-01 | 86.5% | 80.2% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 36.0 | 3.57e-01 | 74.2% | 78.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044316 | 1075.1.1.68 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC_tran_2 | 0.65 | 58.0 | 4.03e-01 | 100.0% | 38.3% |
| 3915254 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.64 | 54.0 | 4.66e-01 | 93.3% | 65.7% |
| 4943371 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 46.0 | 5.04e-01 | 96.6% | 98.6% |
| 3969457 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.62 | 53.0 | 4.62e-01 | 97.8% | 70.3% |
| 3494078 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 4.79e-01 | 96.6% | 100.0% |
| 3626373 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 41.0 | 4.08e-01 | 80.9% | 65.3% |
| 4004606 | 191.1.1.31 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_29 | 0.60 | 45.0 | 4.23e-01 | 79.8% | 66.7% |
| 3421325 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 44.0 | 4.65e-01 | 83.1% | 87.5% |
| 3577161 | 6108.1.1.7 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › OPA1_C | 0.59 | 49.0 | 3.58e-01 | 94.4% | 67.9% |
| 3455776 | 109.23.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › TPR_PATROL1 | 0.57 | 44.0 | 4.70e-01 | 91.0% | 100.0% |
| 3619061 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.57 | 43.0 | 3.13e-01 | 92.1% | 27.7% |
| 3269900 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.56 | 34.0 | 3.48e-01 | 100.0% | 58.9% |
| 3478006 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.55 | 35.0 | 3.74e-01 | 97.8% | 74.7% |
| None | — | 0.55 | 48.0 | 2.95e-01 | 100.0% | 29.3% | |
| None | — | 0.53 | 39.0 | 2.87e-01 | 82.0% | 25.8% | |
| 3667494 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 39.0 | 2.84e-01 | 82.0% | 25.4% |
| 3913850 | 601.19.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PBC (DEPRECATED) | 0.52 | 39.0 | 3.51e-01 | 80.9% | 63.2% |
| 3667752 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 38.0 | 3.39e-01 | 89.9% | 53.8% |
| 3591008 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.51 | 39.0 | 3.65e-01 | 83.1% | 87.8% |
| 4237962 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 40.0 | 2.56e-01 | 84.3% | 18.0% |
| 3795106 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.51 | 32.0 | 3.12e-01 | 82.0% | 54.3% |
| 2832654 | 5058.1.1.1 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1,MS_channel_1st | 0.51 | 37.0 | 3.73e-01 | 80.9% | 75.5% |
| 3819774 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 36.0 | 3.54e-01 | 86.5% | 68.0% |
| 3546710 | 3291.1.1.200 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TAPR1-like | 0.51 | 38.0 | 3.40e-01 | 92.1% | 54.1% |
| 5040955 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.50 | 38.0 | 3.67e-01 | 83.1% | 71.4% |
D8
medium
residues 874-1007_1052-1088