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dnaint_rec
Euk-VirOryctes_rhinoceros_nudivirus
dnaint_rec__YP_002321386__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321386 ↗
- Protein ID:
- dnaint_rec
- Kingdom:
- euk
Quality
70.0
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-146
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 48.0 | 5.46e-01 | 74.3% | 100.0% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.71 | 58.0 | 5.37e-01 | 94.3% | 71.3% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.71 | 42.0 | 4.24e-01 | 75.7% | 59.2% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.70 | 62.0 | 5.36e-01 | 100.0% | 71.2% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 43.0 | 4.16e-01 | 77.1% | 56.4% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.69 | 60.0 | 5.59e-01 | 100.0% | 77.5% |
| 2xv9A00 | 1.10.533.30 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 | 0.68 | 49.0 | 3.97e-01 | 75.7% | 94.0% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.63 | 52.0 | 4.36e-01 | 100.0% | 72.7% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.62 | 47.0 | 4.26e-01 | 82.9% | 77.8% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 45.0 | 4.29e-01 | 82.9% | 75.9% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.58 | 37.0 | 3.84e-01 | 75.7% | 67.6% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 44.0 | 4.21e-01 | 85.7% | 79.3% |
| 4gbjC02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 41.0 | 3.44e-01 | 78.6% | 86.7% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 36.0 | 4.02e-01 | 77.1% | 92.0% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 3.50e-01 | 82.9% | 75.4% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 42.0 | 3.66e-01 | 91.4% | 50.8% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 39.0 | 3.97e-01 | 91.4% | 81.2% |
| 1o0sA02 | 1.20.1370.30 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.54 | 45.0 | 4.01e-01 | 100.0% | 63.9% |
| 3ls9A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 45.0 | 3.02e-01 | 100.0% | 43.2% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 31.0 | 3.02e-01 | 70.0% | 52.6% |
| 4uqxA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 40.0 | 3.79e-01 | 100.0% | 67.4% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 45.0 | 3.67e-01 | 97.1% | 59.7% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 42.0 | 3.69e-01 | 95.7% | 62.4% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 41.0 | 4.15e-01 | 97.1% | 94.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4667626 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.71 | 61.0 | 5.38e-01 | 94.3% | 74.0% |
| 3890414 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 49.0 | 4.98e-01 | 74.3% | 81.4% |
| 4579981 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.69 | 60.0 | 5.17e-01 | 97.1% | 68.2% |
| 185297 | 6035.1.1.2 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C | 0.69 | 60.0 | 5.59e-01 | 100.0% | 77.5% |
| 5007040 | 4204.1.1.5 ↗ | alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 | 0.61 | 51.0 | 3.92e-01 | 97.1% | 82.3% |
| 4205244 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.61 | 46.0 | 4.57e-01 | 84.3% | 78.7% |
| 3984312 | 101.1.1.202 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 | 0.61 | 43.0 | 4.14e-01 | 75.7% | 66.3% |
| 3982565 | 101.1.1.202 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 | 0.60 | 42.0 | 4.57e-01 | 75.7% | 96.4% |
| 5059934 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.60 | 50.0 | 3.87e-01 | 95.7% | 92.1% |
| 3411201 | 601.1.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C | 0.59 | 47.0 | 3.49e-01 | 87.1% | 81.1% |
| 3407793 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 49.0 | 4.76e-01 | 98.6% | 97.5% |
| 3507250 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 41.0 | 3.66e-01 | 84.3% | 79.0% |
| 3902140 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 41.0 | 3.73e-01 | 82.9% | 80.0% |
| 3514291 | 601.1.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C | 0.52 | 45.0 | 3.40e-01 | 97.1% | 45.7% |
| 3505729 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 42.0 | 3.77e-01 | 90.0% | 85.0% |
| 3893417 | 601.1.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C | 0.51 | 41.0 | 3.38e-01 | 91.4% | 85.9% |
| 3462043 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 40.0 | 3.73e-01 | 88.6% | 81.1% |
D2
medium
residues 156-273
Domain cluster:
representative
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930303 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 63.0 | 6.43e-01 | 100.0% | 83.5% |
| 4973226 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 62.0 | 6.22e-01 | 100.0% | 82.5% |
| 4314510 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 59.0 | 6.10e-01 | 100.0% | 86.4% |
| 4413773 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 63.0 | 6.05e-01 | 100.0% | 77.0% |
| 4034370 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 62.0 | 6.19e-01 | 98.3% | 85.0% |
| 5058465 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 60.0 | 5.95e-01 | 100.0% | 79.2% |
| 4122043 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 61.0 | 6.09e-01 | 100.0% | 85.8% |
| 5030307 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 61.0 | 5.97e-01 | 100.0% | 82.4% |
| 4947463 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.73 | 54.0 | 5.72e-01 | 99.2% | 86.7% |
| 5029991 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 59.0 | 5.84e-01 | 100.0% | 81.6% |
| 5052541 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 59.0 | 5.86e-01 | 100.0% | 83.2% |
| 4938259 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.71 | 64.0 | 6.00e-01 | 98.3% | 90.3% |
| 4031846 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 61.0 | 6.04e-01 | 100.0% | 87.2% |
| 4004713 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 59.0 | 5.64e-01 | 100.0% | 78.5% |
| 4093657 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 62.0 | 5.91e-01 | 100.0% | 82.2% |
| 4200953 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 64.0 | 5.79e-01 | 100.0% | 83.9% |
| 3589779 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 62.0 | 5.76e-01 | 100.0% | 88.0% |
| 4473331 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 63.0 | 5.73e-01 | 100.0% | 84.5% |
| 4028841 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 61.0 | 5.86e-01 | 100.0% | 85.2% |
| 3980071 | 101.1.8.9 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Integrase_1 | 0.67 | 58.0 | 5.09e-01 | 100.0% | 64.0% |
| 5018485 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.66 | 61.0 | 5.40e-01 | 100.0% | 82.4% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 61.0 | 5.53e-01 | 100.0% | 89.0% |
| 184514 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 61.0 | 5.52e-01 | 100.0% | 90.5% |
| 4034079 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 60.0 | 5.79e-01 | 100.0% | 88.1% |
| 4659012 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 60.0 | 5.60e-01 | 100.0% | 87.6% |
| 5013304 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.65 | 53.0 | 5.44e-01 | 100.0% | 92.7% |
| 3587110 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.65 | 59.0 | 5.48e-01 | 100.0% | 82.7% |
| 3727612 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 56.0 | 4.94e-01 | 100.0% | 95.0% |
| 3602838 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.59 | 53.0 | 5.07e-01 | 100.0% | 95.7% |
D3
medium
residues 274-355
Domain cluster:
rep: putative_DNAint_rec__YP_009551728__Esparto_virus__2072209__D324-387