dnapol

Euk-Vir

Agrotis_segetum_nucleopolyhedrovirus_B

dnapol__YP_009112657__Agrotis_segetum_nucleopolyhedrovirus_B__1580580

Identity

84.2 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Agrotis_segetum_nucleopolyhedrovirus_B

TaxID: 1580580

View cluster (158 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-68_113-187

PDB

Domain cluster: rep: DNA_polymerase__YP_009666761__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D1-67_114-188

D2 medium residues 188-280_303-318_390-426

PDB

Domain cluster: rep: DNA-POL__YP_009249947__Mocis_latipes_granulovirus__2072024__D203-221_322-453

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	38.9	9.30e-10	63.7%	37.2%

D3 medium residues 281-302_319-389_427-447

PDB

Domain cluster: rep: DNA-POL__YP_009249947__Mocis_latipes_granulovirus__2072024__D203-221_322-453

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03104.26 best	DNA_pol_B_exo1	32.4	8.70e-08	71.0%	32.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gv9A03	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.67	55.0	4.32e-01	86.0%	54.3%
1noyB02	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.64	52.0	4.09e-01	85.1%	53.5%
7r5mA01	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.55	26.0	2.11e-01	86.8%	22.4%
3n54B01	6.20.190.10	Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1	0.54	21.0	2.76e-01	87.7%	60.7%
7sxqA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.50	44.0	3.41e-01	99.1%	43.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5035328	2484.1.1.34 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1	0.80	75.0	5.80e-01	100.0%	61.7%
3667875	67.1.1.0 ↗	beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain	0.54	20.0	2.66e-01	71.9%	58.2%
3517917	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.52	29.0	3.53e-01	99.1%	90.8%
3351840	284.1.3.2 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C	0.51	28.0	3.42e-01	77.2%	87.0%

D4 medium residues 496-537_558-620

PDB

Domain cluster: rep: DNA_polymerase__YP_010086932__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D494-537_560-649

D5 medium residues 538-557_645-780

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00136.27 best	DNA_pol_B	56.4	3.30e-15	87.8%	28.0%