←Back to structures

docking_protein

Euk-Vir

Elephant_endotheliotropic_herpesvirus_4

docking_protein__YP_009179300__Elephant_endotheliotropic_herpesvirus_4__548914

Identity

Accession:
YP_009179300 ↗
Protein ID:
docking_protein
Kingdom:
euk

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_4

TaxID: 548914

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-257
PDB
Domain cluster: rep: nuclear_egress_lamina_protein__YP_009176906__Testudinid_alphaherpesvirus_3__2560801__D127-287
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 132.1 2.60e-38 98.0% 65.9%
D2 medium residues 53-108
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02718.21 best Herpes_UL31 60.4 2.10e-16 100.0% 24.3%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qfkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 43.0 3.44e-01 71.4% 87.0%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.61 42.0 3.83e-01 75.0% 70.7%
4fajA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 40.0 2.89e-01 71.4% 25.3%
4ab7H02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 39.0 2.92e-01 71.4% 52.6%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.87e-01 80.4% 81.2%
3js6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 39.0 2.80e-01 78.6% 40.1%
2ql3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 37.0 3.17e-01 71.4% 44.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.55e-01 71.4% 76.5%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 36.0 2.37e-01 71.4% 32.5%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 35.0 2.75e-01 71.4% 44.9%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.40e-01 71.4% 86.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1693530 225.3.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.95 82.0 5.24e-01 96.4% 23.0%
2813817 225.3.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Virion egress protein UL31 homolog › Virion egress protein UL31 homolog › Herpes_UL31 0.79 65.0 4.26e-01 98.2% 21.6%
4999554 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.00e-01 73.2% 66.7%
3670241 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 43.0 2.68e-01 71.4% 24.6%
5047310 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.63 44.0 2.99e-01 73.2% 21.9%
4208861 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.60 41.0 2.73e-01 71.4% 18.0%
3206696 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.59 46.0 3.12e-01 87.5% 90.6%
5071574 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.36e-01 73.2% 78.1%
3278051 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.58 39.0 2.76e-01 71.4% 88.9%
3421421 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 42.0 2.55e-01 80.4% 10.7%
3510258 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.97e-01 80.4% 84.3%
4992099 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.57 40.0 3.72e-01 76.8% 73.3%
4663921 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 41.0 2.70e-01 82.1% 17.6%
3927639 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 38.0 2.40e-01 76.8% 87.3%
4101939 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.54 45.0 2.85e-01 98.2% 85.8%
3262231 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.05e-01 80.4% 42.2%
5039575 2484.1.1.340 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.53 38.0 2.89e-01 80.4% 50.0%
3941172 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.53 39.0 3.35e-01 78.6% 100.0%
3292891 2003.1.5.121 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.52 38.0 2.65e-01 80.4% 49.5%
3998099 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.51 40.0 3.44e-01 89.3% 56.8%