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early_iridovirus_protein

Euk-Vir

Lymphocystis_disease_virus_4

early_iridovirus_protein__YP_010087900__Lymphocystis_disease_virus_4__2704413

Identity

Accession:: YP_010087900 ↗
Protein ID:: early_iridovirus_protein
Kingdom:: euk

Quality

76.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (69 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-202

PDB

Domain cluster: rep: HQ332139.1__AGF91556.1__PRRG_00047__00045__D4-148

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10927.14 best	DUF2738	128.1	4.30e-37	99.5%	84.3%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1je5A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.73	60.0	6.31e-01	87.9%	93.9%
4jg2A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.67	54.0	5.66e-01	100.0%	90.3%
6etzA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	20.0	2.92e-01	90.4%	65.5%
1pxfA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	29.0	3.68e-01	84.8%	91.0%
4b3fX02	2.40.30.270	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.53	26.0	3.61e-01	88.9%	94.9%
4gioA00	2.60.40.3230	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	25.0	3.35e-01	93.4%	86.5%
5eanA01	2.40.30.270	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.52	27.0	3.49e-01	88.9%	88.9%
8gz3B01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.52	22.0	2.99e-01	90.9%	76.3%
1ir3A01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.50	24.0	3.32e-01	82.8%	92.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4486408	2.1.1.326 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF5482	0.87	60.0	7.08e-01	100.0%	96.6%
3380367	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.77	70.0	7.09e-01	99.5%	95.9%
2132736	2.1.1.53 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd	0.71	56.0	5.86e-01	100.0%	88.8%
4545038	243.3.1.5 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP	0.67	21.0	3.38e-01	95.5%	70.0%
4982262	243.5.1.0 ↗	a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region	0.64	19.0	3.07e-01	96.0%	65.3%
5022726	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.62	17.0	3.24e-01	90.9%	88.0%
4150902	243.3.1.5 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP	0.60	20.0	3.14e-01	96.0%	74.7%
3752910	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	22.0	2.76e-01	94.4%	56.8%
3868838	9.1.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin	0.52	26.0	2.87e-01	80.8%	57.5%
4026643	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.51	19.0	2.80e-01	97.5%	74.1%
153856	1.1.7.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6	0.50	31.0	3.78e-01	90.9%	98.3%