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early_protein

Euk-Vir

Murmansk_poxvirus

early_protein__YP_009408239__Murmansk_poxvirus__2025359

Identity

Accession:: YP_009408239 ↗
Protein ID:: early_protein
Kingdom:: euk

Quality

87.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› Murmansk_poxvirus

TaxID: 2025359

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 136-246

PDB

Domain cluster: rep: MC036R__NP_043987__Molluscum_contagiosum_virus_subtype_1__10280__D824-918

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10523.16 best	BEN	27.2	5.20e-06	70.3%	97.4%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7yugA01	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.76	68.0	6.81e-01	94.6%	99.1%
4nqwA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	29.0	3.72e-01	72.1%	76.6%
3ccyA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	46.0	4.25e-01	91.0%	66.7%
1sgmA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	44.0	3.76e-01	87.4%	55.4%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	41.0	3.84e-01	89.2%	66.2%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.53	37.0	3.38e-01	73.0%	91.9%
2j3rB00	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.53	38.0	3.39e-01	74.8%	71.3%
1lm3B00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.51	36.0	3.66e-01	85.6%	74.5%
4ga4A01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.51	28.0	3.50e-01	81.1%	88.1%
1dqaD01	1.10.3270.10	Mainly Alpha › Orthogonal Bundle › HMGR, N-terminal domain › HMGR, N-terminal domain	0.51	27.0	3.50e-01	72.1%	95.0%
1tazA00	1.10.1300.10	Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	0.51	43.0	3.18e-01	96.4%	90.4%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3846256	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.82	67.0	7.25e-01	91.0%	100.0%
3530628	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.82	67.0	6.68e-01	88.3%	83.5%
3524498	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.79	68.0	6.85e-01	91.9%	91.8%
3920858	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.77	62.0	6.44e-01	86.5%	100.0%
3882062	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.76	63.0	6.53e-01	91.9%	94.3%
3854525	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.75	67.0	6.63e-01	95.5%	97.4%
3489446	101.1.1.416 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF5725	0.74	63.0	6.29e-01	91.9%	96.5%
3910609	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.73	62.0	5.95e-01	90.1%	92.0%
3498569	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.73	59.0	6.11e-01	91.0%	91.4%
3496487	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.72	61.0	5.93e-01	95.5%	83.3%
3926647	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.72	59.0	5.44e-01	88.3%	73.6%
3931911	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.71	60.0	5.96e-01	91.0%	87.8%
3937184	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.70	57.0	5.97e-01	87.4%	99.0%
3928152	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.69	57.0	5.29e-01	88.3%	72.9%
3220382	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.69	57.0	5.67e-01	88.3%	87.8%
3882554	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.67	56.0	5.56e-01	89.2%	100.0%
3223918	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.67	57.0	5.21e-01	91.9%	86.2%
4955440	1079.1.1.0 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA	0.62	46.0	3.87e-01	78.4%	83.2%
4568031	191.1.1.2 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_4	0.61	50.0	4.68e-01	88.3%	80.0%
4178594	191.1.1.50 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › SlmA-like_C	0.58	47.0	4.27e-01	87.4%	73.6%
3974736	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.55	32.0	3.60e-01	91.0%	75.3%
3831168	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	41.0	3.79e-01	79.3%	87.1%
3294610	109.4.1.459 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135	0.52	43.0	4.00e-01	91.9%	88.3%
3236856	174.1.1.50 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807	0.51	39.0	3.31e-01	79.3%	66.3%
4930376	3896.1.1.0 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase	0.50	40.0	3.36e-01	87.4%	87.0%

D2 high residues 248-350

PDB

Domain cluster: rep: Hypothetical_protein_SPPV_32__NP_659608__Sheeppox_virus__10266__D260-357

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7yulA01	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.73	56.0	6.15e-01	80.6%	98.8%
4ix7A00	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.70	57.0	5.54e-01	86.4%	80.7%
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.61	37.0	3.87e-01	100.0%	63.9%
3vbbE01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.61	27.0	2.63e-01	97.1%	34.5%
2rq1A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.55	36.0	3.54e-01	96.1%	61.5%
3go9A02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.54	40.0	3.13e-01	77.7%	68.2%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3530628	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.79	63.0	6.05e-01	83.5%	78.3%
3846256	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.78	62.0	6.49e-01	83.5%	95.8%
4059601	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.74	58.0	6.19e-01	84.5%	95.6%
3907981	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.73	58.0	6.14e-01	84.5%	96.7%
3922008	101.1.1.97 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF4806	0.72	55.0	5.51e-01	86.4%	78.1%
3393516	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.71	55.0	5.36e-01	80.6%	77.3%
224085	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.70	57.0	5.54e-01	86.4%	80.7%
3480927	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.69	57.0	5.84e-01	87.4%	90.0%
3498569	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.69	57.0	5.74e-01	87.4%	92.4%
3489446	101.1.1.416 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF5725	0.68	55.0	5.31e-01	85.4%	98.3%
3931911	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.67	52.0	5.09e-01	84.5%	79.1%
3542946	101.1.1.53 ↗	alpha arrays › HTH › HTH › Three-helical HTH › BEN	0.65	56.0	5.11e-01	94.2%	83.5%
5076856	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.61	40.0	4.06e-01	100.0%	66.7%
5058594	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.54	48.0	3.87e-01	99.0%	87.5%
4150217	633.2.1.1 ↗	alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun	0.51	38.0	4.06e-01	100.0%	91.1%
3950478	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.51	28.0	3.25e-01	84.5%	75.7%
1687145	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	39.0	4.01e-01	83.5%	92.9%

D3 medium residues 1-102

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.62	43.0	4.61e-01	72.5%	83.1%
3w2zA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.62	44.0	3.68e-01	74.5%	98.9%
4gr2A00	1.10.1200.210	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX	0.61	42.0	4.13e-01	70.6%	83.6%
5kbwB00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.58	44.0	3.70e-01	79.4%	74.3%
2g3bA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	44.0	3.62e-01	83.3%	71.7%
3jamD02	3.30.1140.32	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain	0.56	39.0	3.60e-01	71.6%	68.4%
4ap2B01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.54	41.0	3.74e-01	87.3%	60.4%
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	50.0	3.97e-01	97.1%	61.6%
3vglA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.54	39.0	3.34e-01	77.5%	91.9%
3crjC00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	42.0	3.55e-01	89.2%	69.8%
1rz4A01	1.25.40.250	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1	0.51	40.0	3.76e-01	81.4%	79.2%
3lwjA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	42.0	3.50e-01	95.1%	94.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3795528	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	41.0	4.07e-01	90.2%	68.6%
3728216	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.59	53.0	3.50e-01	100.0%	51.7%
3819225	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	52.0	4.68e-01	100.0%	79.3%
3337893	109.4.1.1444 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, TPR_16	0.56	52.0	3.79e-01	100.0%	41.1%
3530780	310.2.1.2 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MIX23	0.55	40.0	3.70e-01	78.4%	59.2%
3423804	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.55	42.0	4.12e-01	81.4%	87.3%
3621308	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.54	41.0	3.40e-01	79.4%	87.4%
3819983	109.4.1.1207 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TmcB	0.54	50.0	4.63e-01	100.0%	87.2%
3383724	109.4.1.210 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19	0.52	45.0	4.24e-01	100.0%	89.2%
3667435	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	29.0	2.82e-01	73.5%	45.8%
4504172	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.51	39.0	3.88e-01	85.3%	81.0%
3518335	109.4.1.142 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K	0.50	38.0	3.85e-01	84.3%	88.6%