Back to structures

encapsidation_protein_22K

Euk-Vir

Goose_adenovirus_4

encapsidation_protein_22K__YP_006383569__Goose_adenovirus_4__1193422

Identity

Accession:
YP_006383569 ↗
Protein ID:
encapsidation_protein_22K
Kingdom:
euk

Quality

65.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 148-196
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 61.0 5.83e-01 83.7% 79.3%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.79 66.0 5.38e-01 95.9% 51.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.08e-01 98.0% 43.8%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 5.83e-01 95.9% 73.5%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 5.26e-01 91.8% 57.3%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 5.67e-01 98.0% 66.7%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 65.0 5.65e-01 95.9% 68.0%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 59.0 5.32e-01 87.8% 68.1%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 4.92e-01 91.8% 52.7%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.67e-01 95.9% 79.4%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.73 61.0 5.11e-01 93.9% 76.5%
2jujA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 49.0 4.71e-01 71.4% 60.7%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.02e-01 91.8% 66.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 55.0 4.37e-01 91.8% 49.1%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.54e-01 95.9% 100.0%
2o35A00 1.10.3340.10 Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like 0.68 46.0 3.97e-01 71.4% 74.7%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 52.0 5.34e-01 85.7% 85.1%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 57.0 5.03e-01 91.8% 68.6%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 52.0 3.80e-01 87.8% 44.3%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 51.0 3.72e-01 87.8% 43.4%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 51.0 4.55e-01 93.9% 92.4%
1bccB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.65 53.0 3.70e-01 98.0% 73.0%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 51.0 4.59e-01 93.9% 90.4%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 50.0 4.87e-01 98.0% 100.0%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 48.0 4.30e-01 93.9% 85.9%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 48.0 3.45e-01 98.0% 80.3%
3mkzN00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 47.0 3.74e-01 91.8% 39.1%
1rylA00 3.40.1760.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family 0.61 47.0 3.44e-01 91.8% 63.1%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 42.0 3.74e-01 73.5% 56.9%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 46.0 3.62e-01 95.9% 53.0%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 50.0 3.03e-01 95.9% 57.3%
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.56 35.0 3.27e-01 71.4% 46.9%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 42.0 3.04e-01 89.8% 27.8%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 39.0 2.99e-01 81.6% 42.9%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.52 35.0 3.40e-01 81.6% 63.6%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 36.0 3.12e-01 75.5% 60.2%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.39e-01 75.5% 18.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211251 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 74.0 7.42e-01 95.9% 92.0%
3930423 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 76.0 7.13e-01 100.0% 95.0%
3590551 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.84 69.0 6.95e-01 91.8% 96.0%
4935262 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.83 74.0 5.11e-01 100.0% 31.2%
3221998 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 68.0 4.83e-01 91.8% 48.3%
3219897 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 72.0 7.22e-01 100.0% 96.0%
3477001 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.82 68.0 4.75e-01 91.8% 37.3%
5044657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 67.0 6.32e-01 91.8% 76.7%
3940696 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.82 69.0 6.87e-01 93.9% 100.0%
4929129 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 5.93e-01 85.7% 78.3%
3925094 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.42e-01 91.8% 87.3%
3925766 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.80 70.0 6.12e-01 100.0% 70.7%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.79 67.0 6.74e-01 95.9% 100.0%
3969119 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.79 66.0 6.40e-01 93.9% 89.1%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.79 66.0 6.61e-01 93.9% 92.0%
3982775 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.79 70.0 6.55e-01 100.0% 90.0%
3984964 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.79 70.0 6.05e-01 100.0% 70.7%
4979726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 5.47e-01 85.7% 68.6%
3890613 101.1.2.698 alpha arrays › HTH › HTH › winged helix domain › PF27079 0.79 68.0 6.23e-01 98.0% 78.5%
4609007 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.79 66.0 6.64e-01 95.9% 98.0%
5079733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 69.0 5.95e-01 98.0% 65.3%
3704050 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 6.10e-01 85.7% 92.0%
4928271 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 6.23e-01 81.6% 100.0%
3858855 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.78 64.0 4.46e-01 91.8% 36.1%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.45e-01 91.8% 58.7%
4950639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 65.0 4.53e-01 95.9% 52.4%
3400463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 60.0 4.80e-01 83.7% 69.5%
4957413 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.78 63.0 6.36e-01 93.9% 96.0%
3519342 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.77 67.0 6.47e-01 98.0% 98.2%
3881313 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 6.05e-01 98.0% 78.5%
3174238 101.1.1.247 alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.76 64.0 5.80e-01 98.0% 70.0%
3687180 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 6.22e-01 93.9% 100.0%
4017273 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 65.0 6.31e-01 100.0% 98.2%
4946654 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.12e-01 100.0% 86.7%
1852511 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.76 60.0 5.38e-01 89.8% 68.6%
3899987 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.75 65.0 5.47e-01 100.0% 62.4%
4188749 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.75 63.0 5.40e-01 95.9% 62.5%
5074546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 4.98e-01 87.8% 55.3%
4944585 101.1.2.872 alpha arrays › HTH › HTH › winged helix domain › rve 0.75 64.0 6.08e-01 100.0% 88.3%
3981939 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.75 65.0 6.31e-01 100.0% 90.9%
3992048 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 6.35e-01 100.0% 100.0%
4945040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.98e-01 100.0% 86.7%
3934874 101.1.1.396 alpha arrays › HTH › HTH › Three-helical HTH › Arg_repressor 0.74 64.0 6.19e-01 98.0% 90.9%
3692027 101.1.2.480 alpha arrays › HTH › HTH › winged helix domain › Clr5 0.73 63.0 6.14e-01 100.0% 98.2%
4929680 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.66e-01 93.9% 80.0%
5024512 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 6.17e-01 100.0% 100.0%
3810810 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.73 58.0 5.76e-01 91.8% 86.8%
3946360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.83e-01 100.0% 78.5%
3590474 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.27e-01 100.0% 60.0%
2036845 3546.1.1.1 alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Pex14_N 0.72 54.0 4.84e-01 83.7% 57.1%
3941666 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 63.0 5.54e-01 100.0% 68.9%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.96e-01 95.9% 87.3%
5029219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 5.63e-01 93.9% 81.8%
3709551 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.58e-01 95.9% 81.7%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.49e-01 95.9% 98.2%
3971281 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.70 58.0 5.63e-01 91.8% 85.5%
4254813 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.69 56.0 3.54e-01 87.8% 40.4%
4501735 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 5.04e-01 93.9% 62.7%
4007629 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.68 56.0 4.90e-01 87.8% 65.7%
4342882 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.68 56.0 5.28e-01 91.8% 78.3%
3984597 101.1.2.488 alpha arrays › HTH › HTH › winged helix domain › DDE_Tnp_IS66 0.68 54.0 4.61e-01 95.9% 87.8%
3949224 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.67 58.0 5.11e-01 93.9% 65.7%
4946761 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 53.0 4.75e-01 87.8% 61.4%
3988910 101.1.1.382 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.67 49.0 5.07e-01 81.6% 97.8%
4659432 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 56.0 4.82e-01 91.8% 62.7%
4176000 4954.1.1.1 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.66 49.0 3.33e-01 81.6% 68.4%
4333531 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.55e-01 91.8% 94.0%
3968335 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.66 58.0 5.40e-01 98.0% 80.0%
3737539 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 49.0 4.30e-01 85.7% 63.7%
4554905 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.65 55.0 5.16e-01 91.8% 78.3%
3632179 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.61 51.0 4.54e-01 100.0% 77.3%
4048642 101.1.1.304 alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.60 48.0 4.57e-01 100.0% 96.8%
3653281 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 37.0 3.23e-01 71.4% 41.2%