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encapsidation_protein_IVa2

Euk-Vir

Human_mastadenovirus_C

encapsidation_protein_IVa2__NP_040515__Human_mastadenovirus_C__129951

Identity

Accession:
NP_040515 ↗
Protein ID:
encapsidation_protein_IVa2
Kingdom:
euk

Quality

80.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Human_mastadenovirus_C

TaxID: 129951

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 93-171_413-449
PDB
Domain cluster: rep: IVa2__YP_009389489__red_squirrel_adenovirus_1__2773314__D63-123_396-424
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 97.0 1.50e-27 69.8% 20.5%
PF02456.22 Adeno_IVa2 36.3 4.10e-09 31.0% 9.5%
D2 medium residues 172-196_252-412
PDB
Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 299.5 4.40e-89 87.1% 43.5%
PF02456.22 Adeno_IVa2 38.1 1.10e-09 15.0% 7.3%
D3 medium residues 197-251
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 92.1 4.60e-26 100.0% 14.9%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jvcA00 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.68 46.0 3.11e-01 100.0% 19.2%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.65 52.0 3.66e-01 90.9% 94.8%
2vx3C02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 49.0 3.28e-01 90.9% 47.7%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 44.0 3.27e-01 78.2% 80.6%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.50e-01 72.7% 48.8%
1zxeC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 49.0 3.51e-01 98.2% 61.9%
2v4iB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.58 43.0 3.99e-01 96.4% 61.0%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.58 41.0 2.90e-01 74.5% 31.5%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 39.0 2.60e-01 70.9% 95.6%
2vx7A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 46.0 2.90e-01 100.0% 39.0%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 42.0 3.13e-01 80.0% 81.2%
1bekA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.56 44.0 3.19e-01 89.1% 75.9%
4b6lA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 46.0 3.35e-01 96.4% 66.5%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.56 40.0 3.30e-01 78.2% 55.6%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 47.0 3.39e-01 100.0% 82.3%
3i1aA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 47.0 3.77e-01 96.4% 81.7%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 2.85e-01 100.0% 86.3%
1s7aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.14e-01 74.5% 58.3%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 43.0 2.67e-01 98.2% 78.3%
3mvgA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 45.0 3.35e-01 100.0% 82.2%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 46.0 3.35e-01 100.0% 85.3%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 43.0 2.83e-01 100.0% 84.2%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.53 38.0 2.41e-01 83.6% 77.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 42.0 2.57e-01 96.4% 33.3%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.52 45.0 3.45e-01 100.0% 92.5%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.65e-01 100.0% 25.1%
1t3qB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 39.0 2.85e-01 92.7% 34.5%
5m7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.15e-01 100.0% 77.5%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.68e-01 100.0% 27.6%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 2.97e-01 100.0% 70.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3653866 101.1.2.123 ↗ alpha arrays › HTH › HTH › winged helix domain › Paf67 0.71 56.0 4.55e-01 85.5% 61.0%
4026243 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 47.0 3.73e-01 70.9% 81.8%
3277286 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.67 44.0 4.07e-01 70.9% 51.4%
5070087 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 51.0 4.45e-01 83.6% 62.4%
3301914 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.65 54.0 3.70e-01 92.7% 37.0%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.64 44.0 2.81e-01 72.7% 16.6%
3483301 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.64 44.0 3.20e-01 70.9% 90.0%
3315228 109.4.1.361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 0.63 51.0 3.50e-01 92.7% 34.4%
4016434 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.63 49.0 2.97e-01 85.5% 27.9%
4086080 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.62 48.0 3.57e-01 87.3% 82.6%
4022116 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.60 45.0 2.93e-01 83.6% 70.9%
3489128 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 50.0 3.06e-01 100.0% 28.4%
3632380 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 46.0 3.09e-01 87.3% 82.1%
3182185 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.59 44.0 2.97e-01 83.6% 76.7%
3768701 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 44.0 2.78e-01 85.5% 26.0%
3274839 5001.1.1.32 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.56 45.0 2.93e-01 89.1% 71.5%
3590899 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.56 46.0 3.41e-01 100.0% 37.0%
4058198 101.1.2.170 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_51 0.56 38.0 2.93e-01 72.7% 44.3%
4497605 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.55 43.0 2.77e-01 89.1% 29.3%
3394594 146.1.1.3 ↗ alpha arrays › Di-copper centre-containing domain › Di-copper centre-containing domain › Di-copper centre-containing domain › Hemocyanin_M 0.55 41.0 2.92e-01 83.6% 70.5%
3346911 109.4.1.94 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANTH 0.55 41.0 3.05e-01 87.3% 77.7%
3640483 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 3.11e-01 98.2% 23.0%
3999160 2004.1.1.542 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_7 0.55 42.0 2.42e-01 83.6% 9.8%
3788426 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 2.46e-01 89.1% 10.7%
3731016 2002.3.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF 0.54 47.0 3.10e-01 100.0% 45.6%
3697428 2002.3.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › LamB_YcsF 0.54 45.0 3.05e-01 100.0% 46.0%
3989612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.69e-01 85.5% 68.3%
3785380 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 39.0 2.42e-01 85.5% 88.7%
3477688 2494.1.1.1 ↗ a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › Tyr_Deacylase 0.53 43.0 3.28e-01 98.2% 44.2%
4352731 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 43.0 3.22e-01 100.0% 72.4%
5011992 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 2.82e-01 76.4% 30.4%
4860672 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.52 41.0 2.64e-01 89.1% 29.9%
4005987 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.01e-01 81.8% 75.2%
3169050 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.51 39.0 3.28e-01 81.8% 68.8%
3839545 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.51 41.0 2.56e-01 98.2% 80.5%
4251053 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 38.0 2.65e-01 90.9% 65.9%
3299800 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.51 44.0 2.88e-01 100.0% 66.7%
4395892 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.51 41.0 2.55e-01 89.1% 25.2%
3341962 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.50 42.0 2.57e-01 100.0% 39.8%