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endonuclease_VIII-like_protein

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

endonuclease_VIII-like_protein__YP_003987249__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987249 ↗
Protein ID:
endonuclease_VIII-like_protein
Kingdom:
euk

Quality

58.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 65-165
PDB
D2 high residues 176-311
PDB
Domain cluster: rep: AB605730.1__BAK52944.1__X__00132__D130-268
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06831.20 best H2TH 42.1 1.00e-10 67.7% 73.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.93 87.0 8.43e-01 96.3% 89.1%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.88 78.0 7.83e-01 96.3% 91.9%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.84 70.0 7.43e-01 88.2% 95.1%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 69.0 7.17e-01 96.3% 95.3%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 72.0 7.35e-01 96.3% 94.8%
3vk8A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.80 73.0 7.04e-01 96.3% 94.7%
3twkA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.79 69.0 6.68e-01 94.9% 83.2%
4nrvA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 70.0 6.92e-01 94.9% 98.6%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 30.0 3.63e-01 75.0% 58.2%
1g4uS01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.57 41.0 4.27e-01 74.3% 89.8%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.55 38.0 3.76e-01 70.6% 73.1%
1v9mA03 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.54 37.0 4.28e-01 73.5% 100.0%
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 45.0 3.58e-01 94.1% 91.9%
3thxB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 38.0 3.42e-01 72.8% 83.2%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.53 23.0 3.15e-01 88.2% 79.1%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.52 29.0 3.36e-01 84.6% 75.0%
3qz1D00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 40.0 2.83e-01 83.1% 61.1%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 37.0 3.53e-01 75.7% 70.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1622646 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.90 64.0 7.19e-01 72.8% 90.0%
4996515 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.89 56.0 6.57e-01 73.5% 87.0%
4945709 102.2.1.14 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › zf-FPG_IleRS 0.87 55.0 6.40e-01 72.8% 87.0%
1157322 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.87 58.0 6.90e-01 75.0% 96.8%
4033402 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.86 55.0 6.55e-01 72.8% 91.6%
3861278 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.85 58.0 6.87e-01 76.5% 97.9%
4068411 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.85 54.0 6.26e-01 75.7% 86.0%
4982925 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.84 51.0 6.36e-01 73.5% 97.6%
5041518 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.83 55.0 6.51e-01 80.1% 95.8%
4978703 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.82 59.0 6.76e-01 75.0% 95.2%
4189420 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.82 56.0 6.35e-01 81.6% 89.5%
3725278 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.82 54.0 6.40e-01 73.5% 95.8%
4042537 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.82 75.0 7.50e-01 96.3% 95.7%
4041924 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.81 73.0 7.08e-01 94.1% 93.3%
4655710 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.81 73.0 7.24e-01 94.1% 92.3%
None — 0.81 59.0 6.66e-01 74.3% 99.0%
3960230 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.80 58.0 6.18e-01 73.5% 87.5%
4123959 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.80 72.0 7.17e-01 94.9% 94.2%
3956937 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.79 71.0 7.00e-01 94.1% 93.7%
4052526 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.79 56.0 6.38e-01 72.8% 98.1%
4649458 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.78 54.0 6.35e-01 70.6% 98.0%
4084995 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.78 56.0 6.19e-01 72.8% 98.2%
4978435 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.78 56.0 6.26e-01 74.3% 95.5%
145647 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.77 53.0 6.01e-01 70.6% 90.4%
4514230 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.77 55.0 6.37e-01 72.1% 99.0%
4092544 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.77 54.0 6.36e-01 72.8% 98.0%
5032908 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.77 56.0 6.32e-01 74.3% 98.1%
3944743 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.77 54.0 6.25e-01 73.5% 98.0%
5027504 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.77 47.0 5.70e-01 77.2% 93.3%
4160379 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.76 55.0 6.22e-01 73.5% 96.2%
3957323 102.2.1.4 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › H2TH 0.76 52.0 6.00e-01 80.9% 95.0%
4970770 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.73 55.0 5.60e-01 81.6% 78.5%
5031246 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.72 54.0 5.53e-01 79.4% 80.0%
4941311 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.72 51.0 5.47e-01 83.8% 83.3%
4968258 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.72 53.0 5.51e-01 80.9% 82.4%
5034089 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.71 53.0 5.58e-01 80.9% 84.0%
5051445 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.71 53.0 5.47e-01 81.6% 80.8%
5069452 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.71 52.0 5.33e-01 78.7% 78.5%
4934443 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.71 52.0 5.20e-01 83.1% 73.6%
5003054 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.70 53.0 5.41e-01 78.7% 80.0%
4975930 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.70 53.0 5.32e-01 79.4% 77.8%
4979326 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.70 52.0 5.48e-01 80.1% 84.0%
4999970 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.70 52.0 5.24e-01 80.9% 77.0%
4980837 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.70 50.0 5.34e-01 79.4% 83.3%
4964967 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.69 53.0 5.28e-01 81.6% 77.1%
4984919 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.68 51.0 5.01e-01 81.6% 72.4%
5045440 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.67 52.0 5.38e-01 84.6% 85.4%
4953240 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.66 50.0 5.08e-01 80.9% 78.5%