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endonuclease

Euk-Vir

Noumeavirus

endonuclease__YP_009345548__Noumeavirus__1955558

Identity

Accession:
YP_009345548 ↗
Protein ID:
endonuclease
Kingdom:
euk

Quality

88.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 381-496
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04480.19 best DUF559 22.3 1.40e-04 70.7% 45.9%
D2 medium residues 1-102
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 30.4 5.10e-07 53.9% 82.1%
D3 medium residues 165-244
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 39.8 5.80e-10 67.5% 96.4%
D4 medium residues 247-314
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 41.2 2.20e-10 79.4% 98.2%
D5 medium residues 315-377
PDB
Domain cluster: rep: restriction_endonuclease__YP_007354634__Acanthamoeba_polyphaga_moumouvirus__1269028__D242-298
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 34.7 2.20e-08 79.4% 92.9%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 45.0 4.82e-01 73.0% 100.0%
1bryY02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.57 40.0 3.70e-01 76.2% 85.9%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.88e-01 92.1% 84.5%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.56 40.0 3.68e-01 76.2% 85.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.05e-01 81.0% 82.9%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.54 39.0 3.64e-01 77.8% 85.2%
2zr1A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 37.0 3.46e-01 74.6% 85.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.89e-01 82.5% 85.1%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.25e-01 81.0% 90.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.96e-01 79.4% 77.3%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 35.0 3.71e-01 85.7% 78.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.01e-01 82.5% 90.3%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.20e-01 88.9% 97.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.79e-01 81.0% 72.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 35.0 3.68e-01 84.1% 80.7%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.60e-01 100.0% 89.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.74 58.0 6.00e-01 88.9% 88.3%
4951801 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 43.0 3.56e-01 82.5% 96.7%
138904 223.1.1.127 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Diguanyl_cycl_sensor 0.57 47.0 3.95e-01 92.1% 79.3%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.57 45.0 3.15e-01 90.5% 32.7%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.56 42.0 4.35e-01 81.0% 84.5%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.56 44.0 3.25e-01 84.1% 77.4%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.56 42.0 4.10e-01 81.0% 88.6%
4958385 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 31.0 3.77e-01 71.4% 82.5%
4312876 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 41.0 3.26e-01 82.5% 38.5%
3969558 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 42.0 3.29e-01 82.5% 38.5%
3373407 1013.1.1.0 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain 0.55 38.0 2.75e-01 73.0% 86.2%
4082783 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.55 42.0 3.13e-01 82.5% 32.5%
4278298 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 41.0 3.25e-01 82.5% 38.5%
3590354 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 41.0 3.21e-01 82.5% 38.5%
4166118 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 40.0 3.21e-01 82.5% 40.0%
3964552 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 40.0 3.19e-01 82.5% 38.5%
4432712 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 40.0 3.90e-01 82.5% 95.7%
5052502 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 40.0 3.18e-01 82.5% 38.5%
4093657 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 40.0 3.13e-01 82.5% 37.8%
3839972 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 39.0 3.69e-01 85.7% 66.7%
4996190 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 39.0 3.21e-01 82.5% 41.6%
4053930 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 41.0 3.18e-01 87.3% 36.7%
4954764 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 39.0 3.38e-01 82.5% 49.5%
5035582 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 39.0 3.28e-01 82.5% 45.2%
4949702 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 39.0 3.21e-01 82.5% 43.3%
3834747 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 38.0 3.74e-01 87.3% 72.9%
4989217 304.39.1.6 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.51 35.0 3.64e-01 79.4% 75.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 38.0 3.78e-01 87.3% 78.5%
4929593 304.139.1.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.50 41.0 2.58e-01 90.5% 91.3%