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env_protein

Euk-Vir

Yellow-breasted_capuchin_simian_foamy_virus

env_protein__YP_009508583__Yellow-breasted_capuchin_simian_foamy_virus__2170206

Identity

Accession:
YP_009508583 ↗
Protein ID:
env_protein
Kingdom:
euk

Quality

53.3 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Simiispumavirus› Yellow-breasted_capuchin_simian_foamy_virus

TaxID: 2170206

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-65
PDB
D2 medium residues 150-166_711-803
PDB
D3 medium residues 167-225_700-710
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03408.21 best Foamy_virus_ENV 83.6 1.20e-23 88.6% 6.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 34.0 3.13e-01 87.1% 43.2%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.34e-01 88.6% 50.0%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.94e-01 95.7% 68.4%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 34.0 3.66e-01 84.3% 72.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.86e-01 84.3% 77.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.36e-01 87.1% 59.7%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.53 41.0 4.33e-01 85.7% 96.7%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.38e-01 91.4% 54.2%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.38e-01 91.4% 58.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 30.0 2.81e-01 82.9% 40.9%
2j6bA00 3.40.50.11170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF08960, DUF1874 0.52 27.0 2.34e-01 100.0% 33.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.53e-01 92.9% 65.5%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.66e-01 88.6% 81.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041916 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 34.0 2.75e-01 81.4% 27.1%
5005544 101.1.2.205 ↗ alpha arrays › HTH › HTH › winged helix domain › PF0610-like_N 0.59 37.0 3.75e-01 82.9% 62.9%
5076562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.19e-01 88.6% 85.0%
5012519 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 36.0 3.96e-01 90.0% 85.5%
2841509 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.52 40.0 2.65e-01 82.9% 66.0%
7676 4259.1.1.1 ↗ a+b complex topology › STIV B116-like › STIV B116-like › STIV B116-like › STIV_B116-like 0.52 27.0 2.34e-01 100.0% 33.9%
5083248 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.51 30.0 3.22e-01 82.9% 66.7%
3208116 5.1.4.91 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 0.51 36.0 2.25e-01 74.3% 20.0%
3990868 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.50 42.0 3.56e-01 94.3% 65.8%
D4 medium residues 226-260_312-327_487-556
PDB
D5 medium residues 261-311_397-486
PDB