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envelope_glycoprotein_B
Euk-VirEquid_alphaherpesvirus_4
envelope_glycoprotein_B__NP_045250__Equid_alphaherpesvirus_4__10331
Identity
- Accession:
- NP_045250 ↗
- Protein ID:
- envelope_glycoprotein_B
- Kingdom:
- euk
Quality
66.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_4
TaxID: 10331
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 124-146_643-733
Domain cluster:
rep: envelope_glycoprotein_B__YP_068330__Suid_alphaherpesvirus_1__10345__D109-133_596-685
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 88.8 | 5.10e-25 | 85.1% | 36.9% |
D2
medium
residues 162-178_388-501
Domain cluster:
rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17417.9 best | Glycoprot_B_PH2 | 98.9 | 2.30e-28 | 74.8% | 100.0% |
D3
medium
residues 179-297
Domain cluster:
rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 112.7 | 2.70e-32 | 100.0% | 55.7% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.67 | 34.0 | 3.56e-01 | 100.0% | 52.8% |
| 6x3aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 35.0 | 3.75e-01 | 96.6% | 61.5% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 35.0 | 4.38e-01 | 94.1% | 100.0% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 35.0 | 3.33e-01 | 100.0% | 51.4% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.56 | 32.0 | 3.37e-01 | 95.8% | 61.0% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.55 | 26.0 | 3.58e-01 | 95.0% | 88.3% |
| 7pwfD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.55 | 29.0 | 3.29e-01 | 96.6% | 66.3% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 31.0 | 2.97e-01 | 100.0% | 46.6% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.52 | 35.0 | 4.02e-01 | 97.5% | 97.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.95 | 91.0 | 7.08e-01 | 100.0% | 52.9% |
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.91 | 83.0 | 6.68e-01 | 100.0% | 54.3% |
| 4877472 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.83 | 69.0 | 6.34e-01 | 88.2% | 69.3% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.71 | 42.0 | 5.27e-01 | 96.6% | 100.0% |
| 5012930 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 30.0 | 3.58e-01 | 91.6% | 60.0% |
| 3491662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 31.0 | 3.81e-01 | 95.8% | 66.2% |
| 4941178 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.65 | 34.0 | 3.60e-01 | 95.0% | 54.6% |
| 5062273 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.64 | 36.0 | 3.49e-01 | 95.0% | 50.8% |
| 4950854 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 32.0 | 3.60e-01 | 95.0% | 64.4% |
| 3408652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 40.0 | 3.61e-01 | 82.4% | 50.6% |
| 3805853 | 10.32.1.192 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID | 0.59 | 36.0 | 3.03e-01 | 96.6% | 36.9% |
| 4966356 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 39.0 | 4.04e-01 | 95.0% | 73.6% |
| 3411669 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 38.0 | 3.99e-01 | 89.1% | 72.7% |
| 3299910 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.57 | 36.0 | 3.64e-01 | 95.8% | 62.5% |
| 5030450 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 33.0 | 3.08e-01 | 99.2% | 45.5% |
| 4958415 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.55 | 35.0 | 3.70e-01 | 84.0% | 70.0% |
| 5014950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 36.0 | 3.31e-01 | 98.3% | 51.0% |
| 5035506 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 30.0 | 3.32e-01 | 96.6% | 66.3% |
| 3908007 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.53 | 32.0 | 2.98e-01 | 98.3% | 46.0% |
| 3183475 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 37.0 | 3.27e-01 | 95.8% | 50.0% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 28.0 | 3.58e-01 | 96.6% | 92.3% |
| 3927415 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 33.0 | 3.46e-01 | 96.6% | 70.2% |
| 5039895 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 35.0 | 3.56e-01 | 96.6% | 67.5% |
| 3243597 | 10.32.1.277 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF870 | 0.52 | 27.0 | 3.16e-01 | 96.6% | 69.4% |
| 3238841 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.29e-01 | 95.8% | 58.5% |
| 5050550 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 38.0 | 3.83e-01 | 99.2% | 78.3% |
| 3265499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.20e-01 | 98.3% | 50.3% |
D4
medium
residues 298-387
Domain cluster:
rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 96.4 | 2.70e-27 | 98.9% | 41.9% |