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envelope_glycoprotein_B

Euk-Vir

Psittacid_alphaherpesvirus_1

envelope_glycoprotein_B__NP_944400__Psittacid_alphaherpesvirus_1__50294

Identity

Accession:
NP_944400 ↗
Protein ID:
envelope_glycoprotein_B
Kingdom:
euk

Quality

66.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Psittacid_alphaherpesvirus_1

TaxID: 50294

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 67-90_544-579
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.86 61.0 5.01e-01 81.7% 44.0%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 37.0 2.37e-01 76.7% 60.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4361081 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 32.0 3.47e-01 78.3% 75.6%
3962243 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.52 38.0 3.55e-01 78.3% 73.3%
D2 medium residues 91-124_331-376_453-543
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF17417.9 best Glycoprot_B_PH2 42.1 1.30e-10 59.7% 96.9%
PF00606.24 Glycoprotein_B 112.6 2.80e-32 43.3% 32.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.92 52.0 6.82e-01 100.0% 96.0%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 47.0 6.13e-01 99.4% 96.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488247 4300.1.1.1 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B 0.95 38.0 3.66e-01 100.0% 36.4%
3878495 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.58 36.0 3.36e-01 82.5% 47.9%
D3 medium residues 125-245
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 126.6 1.50e-36 100.0% 58.1%
D4 medium residues 246-330_693-725
PDB
Domain cluster: rep: Cy89__YP_009337505__Cynomolgus_cytomegalovirus__1919083__D227-314_636-647
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 100.6 1.40e-28 72.0% 40.9%
D5 medium residues 377-427
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17417.9 best Glycoprot_B_PH2 59.7 4.10e-16 100.0% 51.5%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.99 95.0 6.82e-01 100.0% 42.1%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.93 82.0 6.18e-01 94.1% 43.6%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 53.0 5.00e-01 96.1% 72.3%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 53.0 3.70e-01 98.0% 28.6%
4eo0A00 3.30.110.160 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.64 55.0 4.36e-01 98.0% 59.4%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.64 52.0 3.84e-01 98.0% 39.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.63 51.0 4.41e-01 98.0% 57.1%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.63 51.0 3.37e-01 96.1% 23.2%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 50.0 3.83e-01 96.1% 44.8%
7f79A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.61 43.0 3.20e-01 82.4% 56.0%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 46.0 3.30e-01 88.2% 83.9%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 45.0 3.39e-01 84.3% 61.0%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 49.0 4.29e-01 96.1% 98.8%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.60 52.0 3.19e-01 100.0% 35.1%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.73e-01 96.1% 47.1%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.17e-01 98.0% 70.2%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.59 45.0 3.42e-01 86.3% 76.2%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 46.0 2.89e-01 86.3% 17.8%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 38.0 2.84e-01 76.5% 26.0%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 46.0 2.83e-01 88.2% 55.0%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 49.0 3.59e-01 100.0% 43.8%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.58 49.0 3.11e-01 100.0% 84.4%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 44.0 3.98e-01 94.1% 57.8%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.57 44.0 4.18e-01 96.1% 91.2%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 45.0 3.08e-01 90.2% 42.1%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 47.0 3.04e-01 100.0% 60.7%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 43.0 3.33e-01 92.2% 45.4%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.56 41.0 2.92e-01 82.4% 34.7%
3cwcA02 3.90.1510.10 Alpha Beta › Alpha-Beta Complex › Glycerate kinase, domain 2 › Glycerate kinase, domain 2 0.56 42.0 2.76e-01 92.2% 18.3%
6et0A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 44.0 3.25e-01 92.2% 68.2%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.54 43.0 3.24e-01 88.2% 47.5%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 45.0 2.87e-01 100.0% 68.2%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 2.77e-01 100.0% 47.9%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.52 40.0 3.17e-01 90.2% 50.4%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 39.0 3.33e-01 90.2% 52.5%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.51 41.0 2.71e-01 94.1% 38.8%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.71e-01 96.1% 56.3%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 43.0 3.10e-01 100.0% 35.2%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.51 40.0 3.01e-01 98.0% 69.8%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.51 38.0 2.48e-01 80.4% 99.5%
4k1pE00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 41.0 2.54e-01 94.1% 50.8%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 43.0 2.90e-01 100.0% 83.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211040 910.1.1.1 ↗ few secondary structure elements › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › DM 0.70 50.0 4.52e-01 84.3% 54.1%
3924669 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 55.0 4.63e-01 96.1% 50.5%
4976198 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.67 56.0 4.87e-01 98.0% 61.2%
3603683 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 50.0 3.72e-01 88.2% 37.9%
3194847 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.64 47.0 2.64e-01 78.4% 13.6%
3700769 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.63 52.0 4.24e-01 98.0% 53.3%
4160692 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.62 53.0 3.51e-01 100.0% 76.4%
3241453 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.62 47.0 2.98e-01 90.2% 16.2%
4948264 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 51.0 4.54e-01 100.0% 70.0%
4233683 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.61 51.0 3.44e-01 98.0% 78.2%
5078624 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 48.0 4.04e-01 98.0% 53.3%
5030848 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 46.0 3.46e-01 88.2% 37.9%
4534145 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.60 49.0 3.98e-01 98.0% 51.8%
3838659 5085.1.1.0 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 41.0 2.47e-01 88.2% 9.5%
4041628 3281.1.1.2 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.59 44.0 2.52e-01 80.4% 49.2%
3563894 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.58 40.0 2.33e-01 82.4% 8.2%
4344201 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.58 41.0 3.54e-01 80.4% 44.4%
3249830 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 49.0 3.71e-01 96.1% 40.8%
4809699 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.58 46.0 4.35e-01 100.0% 73.8%
3639274 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.57 42.0 2.46e-01 82.4% 59.6%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.57 46.0 3.02e-01 92.2% 22.5%
4399128 7581.1.1.30 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.56 45.0 2.80e-01 98.0% 59.2%
3731446 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 48.0 3.32e-01 100.0% 56.8%
None — 0.55 41.0 2.51e-01 78.4% 51.0%
1117759 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 43.0 2.73e-01 86.3% 31.4%
3786528 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.53 45.0 2.50e-01 100.0% 10.0%
3658083 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 45.0 2.71e-01 100.0% 29.6%
3832498 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.53 44.0 2.92e-01 94.1% 47.4%
4836497 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.52 43.0 2.99e-01 92.2% 30.2%
3711262 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.52 43.0 3.69e-01 98.0% 91.1%
3636403 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.52 42.0 3.18e-01 90.2% 73.1%
1824189 327.6.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.51 40.0 3.08e-01 98.0% 75.8%
3500662 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.51 41.0 3.03e-01 88.2% 50.4%
4013407 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 44.0 2.77e-01 100.0% 47.5%
3709549 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 40.0 2.85e-01 90.2% 86.7%
4938493 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.27e-01 92.2% 71.4%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.50 44.0 2.46e-01 100.0% 8.7%
3996689 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.50 36.0 3.10e-01 98.0% 47.1%
D6 medium residues 614-665
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00606.24 best Glycoprotein_B 64.8 1.20e-17 100.0% 22.5%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.95 88.0 6.91e-01 100.0% 52.0%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.90 65.0 5.58e-01 96.2% 50.0%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.66 41.0 3.92e-01 90.4% 53.2%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 3.55e-01 82.7% 70.9%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 46.0 3.39e-01 82.7% 72.2%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.41e-01 86.5% 68.1%
3immA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 46.0 3.22e-01 88.5% 59.4%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.50e-01 86.5% 77.6%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.12e-01 94.2% 57.8%
1ggpA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.59 48.0 3.56e-01 94.2% 58.4%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 3.35e-01 86.5% 68.9%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.59 46.0 2.91e-01 88.5% 31.7%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 45.0 3.07e-01 88.5% 58.1%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.18e-01 94.2% 68.5%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 47.0 3.92e-01 92.3% 75.8%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 44.0 3.01e-01 88.5% 53.8%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.10e-01 98.1% 63.6%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 45.0 3.77e-01 88.5% 50.0%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.35e-01 86.5% 72.5%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.40e-01 88.5% 45.4%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.31e-01 86.5% 72.7%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 2.87e-01 88.5% 46.1%
2k6hA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 43.0 3.14e-01 88.5% 45.6%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.28e-01 86.5% 72.1%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 2.85e-01 82.7% 41.7%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.00e-01 88.5% 61.3%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 2.83e-01 90.4% 48.2%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.56 47.0 3.40e-01 94.2% 84.6%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.25e-01 86.5% 72.3%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.27e-01 86.5% 74.8%
7ccbA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 43.0 3.11e-01 84.6% 66.2%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.27e-01 86.5% 73.4%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.05e-01 94.2% 61.7%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.55 46.0 4.04e-01 90.4% 82.4%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.15e-01 88.5% 43.5%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.17e-01 88.5% 45.0%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.76e-01 100.0% 41.7%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.08e-01 94.2% 76.0%
7c8fA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.60e-01 82.7% 53.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 42.0 3.21e-01 96.2% 76.4%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.82e-01 88.5% 53.4%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 44.0 2.81e-01 100.0% 36.8%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 41.0 2.89e-01 86.5% 60.0%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 38.0 2.62e-01 88.5% 42.9%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.72e-01 86.5% 52.5%
6x0oA01 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.51 39.0 2.83e-01 86.5% 34.4%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 2.78e-01 96.2% 76.3%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.68e-01 94.2% 79.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488247 4300.1.1.1 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B 0.93 87.0 5.69e-01 100.0% 27.8%
3418340 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.68 47.0 2.89e-01 73.1% 37.6%
3921380 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.66 48.0 3.56e-01 78.8% 76.4%
3214327 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.65 47.0 3.59e-01 80.8% 74.1%
3916301 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 45.0 3.38e-01 75.0% 75.4%
3925030 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 47.0 3.41e-01 82.7% 75.6%
4956322 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.63 46.0 3.08e-01 88.5% 19.5%
4316823 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.63 50.0 3.85e-01 88.5% 62.7%
3798404 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 45.0 3.35e-01 80.8% 73.1%
4443103 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.61 49.0 3.85e-01 88.5% 69.1%
3958912 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.61 50.0 3.97e-01 88.5% 74.0%
4058896 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.61 49.0 3.91e-01 88.5% 70.5%
3851887 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 46.0 3.38e-01 88.5% 94.4%
3519839 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 47.0 3.42e-01 86.5% 69.0%
3231054 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 47.0 3.43e-01 86.5% 70.7%
4675977 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.59 46.0 4.15e-01 88.5% 85.3%
4665982 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.59 47.0 3.80e-01 88.5% 71.0%
3406958 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 49.0 3.06e-01 96.2% 36.8%
3602888 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.58 48.0 3.35e-01 94.2% 66.3%
3798957 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 3.38e-01 86.5% 71.9%
3939243 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 46.0 3.40e-01 86.5% 72.6%
4000954 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 45.0 3.13e-01 86.5% 64.2%
3515797 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 48.0 3.02e-01 96.2% 38.3%
3488129 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.56 44.0 3.15e-01 86.5% 65.2%
4073461 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.56 45.0 3.00e-01 86.5% 27.9%
5043894 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 3.09e-01 86.5% 41.8%
3797509 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 42.0 3.13e-01 86.5% 60.0%
3704047 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.60e-01 92.3% 59.8%
3244141 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.54 46.0 2.77e-01 96.2% 34.6%
4889001 5.1.4.280 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.54 46.0 2.87e-01 100.0% 36.7%
3271259 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 42.0 3.65e-01 88.5% 91.8%
5053366 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.54 47.0 2.90e-01 100.0% 34.8%
4359442 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.54 42.0 2.79e-01 84.6% 45.5%
3175648 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.53 41.0 2.62e-01 90.4% 37.5%
3560397 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 44.0 2.80e-01 96.2% 64.5%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 42.0 2.64e-01 86.5% 38.5%
4991701 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 40.0 2.68e-01 84.6% 47.4%
3593233 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.53 41.0 3.36e-01 90.4% 99.0%
4104001 6.1.1.21 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Inhibitor_I66 0.52 41.0 3.00e-01 86.5% 66.4%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.52 43.0 2.70e-01 92.3% 35.2%
3233353 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.51 41.0 3.04e-01 88.5% 37.8%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.51 43.0 3.32e-01 94.2% 85.0%
5057575 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.51 44.0 2.76e-01 94.2% 38.7%