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envelope_glycoprotein_B

Euk-Vir

Equid_gammaherpesvirus_5

envelope_glycoprotein_B__YP_009118398__Equid_gammaherpesvirus_5__10371

Identity

Accession:: YP_009118398 ↗
Protein ID:: envelope_glycoprotein_B
Kingdom:: euk

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-294

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009052019__Elephant_endotheliotropic_herpesvirus_5__768738__D95-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	216.3	5.30e-64	100.0%	94.8%

D2 medium residues 54-71_580-621

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fvcA01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.67	49.0	4.39e-01	76.7%	95.0%
2gumB01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.66	51.0	4.27e-01	83.3%	98.0%
3noyB02	3.30.413.10	Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1	0.58	41.0	3.49e-01	75.0%	74.7%
8ep4C01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	41.0	2.70e-01	80.0%	76.3%
3u9sE04	3.30.700.40	Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin ›	0.55	40.0	3.14e-01	75.0%	70.4%
5ocqA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	42.0	2.71e-01	83.3%	80.1%
1itvA00	2.110.10.10	Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain	0.54	42.0	2.98e-01	86.7%	69.2%
6n44A00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	45.0	3.35e-01	88.3%	77.7%
3l9rA01	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.54	41.0	2.97e-01	83.3%	85.7%
3ap9A00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	44.0	3.23e-01	88.3%	72.8%
2wsuB02	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	45.0	3.33e-01	90.0%	77.1%
1w0pA03	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	44.0	3.07e-01	90.0%	52.9%
4nsxA02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	46.0	2.91e-01	96.7%	41.5%
5xrkA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	45.0	3.33e-01	90.0%	77.3%
1e2tA02	3.30.1120.150	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.53	45.0	4.04e-01	96.7%	73.3%
4ym3C00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	43.0	3.23e-01	88.3%	76.4%
3zsjA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	44.0	3.29e-01	90.0%	76.8%
4py5A01	3.30.310.10	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein	0.51	31.0	2.97e-01	73.3%	51.4%
5nldB00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	43.0	3.21e-01	90.0%	76.8%
3h3lC00	2.60.120.560	Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1	0.50	39.0	2.69e-01	86.7%	88.3%
3ilfA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.50	41.0	2.71e-01	86.7%	79.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2488247	4300.1.1.1 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B	0.79	68.0	4.74e-01	95.0%	92.5%
3993085	5.1.1.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin	0.60	49.0	3.39e-01	88.3%	68.7%
3314585	5.1.5.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40	0.56	44.0	3.01e-01	90.0%	71.8%
3172856	5.1.4.575 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290	0.56	47.0	3.06e-01	95.0%	41.1%
3176357	5.1.5.4 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N	0.55	42.0	2.55e-01	85.0%	58.5%
None	—		0.54	47.0	2.95e-01	96.7%	43.2%
4980090	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.54	36.0	3.38e-01	70.0%	73.8%
3271259	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.53	40.0	3.55e-01	78.3%	77.6%
4200177	3894.1.1.3 ↗	beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M	0.53	39.0	3.04e-01	78.3%	44.6%
3335901	12.3.1.19 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2	0.53	41.0	2.63e-01	81.7%	28.1%
3250914	5.1.4.38 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1	0.51	44.0	2.69e-01	98.3%	37.0%
3260311	10.1.1.8 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY	0.50	40.0	2.30e-01	85.0%	19.4%
4026175	10.1.1.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases	0.50	38.0	2.75e-01	86.7%	82.4%

D3 medium residues 85-101_297-403

PDB

Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17417.9 best	Glycoprot_B_PH2	104.6	3.90e-30	78.2%	97.9%