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envelope_glycoprotein_B

Euk-Vir

Human_alphaherpesvirus_2

envelope_glycoprotein_B__YP_009137179__Human_alphaherpesvirus_2__10310

Identity

Accession:: YP_009137179 ↗
Protein ID:: envelope_glycoprotein_B
Kingdom:: euk

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_2

TaxID: 10310

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 109-137_378-392_498-578

PDB

Domain cluster: rep: hypothetical_protein_BA82_gp099__YP_009001572__Anomala_cuprea_entomopoxvirus__62099__D14-49_268-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	118.9	3.30e-34	65.6%	36.5%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gumA02	1.20.5.1890	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.88	69.0	7.69e-01	91.2%	100.0%
3fvcA02	1.20.5.1890	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.81	63.0	7.02e-01	90.4%	100.0%
2pq0A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.61	21.0	2.39e-01	88.0%	37.0%
6vudA02	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.56	24.0	2.96e-01	90.4%	61.3%
6lcqA00	3.30.30.10	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like	0.56	24.0	3.43e-01	88.8%	88.9%
1in0A01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	22.0	2.83e-01	88.8%	61.4%
3pgvA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.54	21.0	2.38e-01	88.0%	42.6%
1wihA00	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.53	25.0	2.94e-01	92.8%	61.9%
5mmjh01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.53	21.0	2.69e-01	88.8%	58.7%
1wr8A02	3.90.1070.10	Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 ›	0.52	21.0	2.66e-01	87.2%	58.0%
3onqA02	3.30.70.2730	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	24.0	2.87e-01	96.0%	65.4%
2hf2B02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.51	22.0	2.34e-01	88.8%	40.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2488247	4300.1.1.1 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B	0.93	61.0	5.16e-01	100.0%	44.4%
3997467	4300.1.1.0 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like	0.78	60.0	5.23e-01	96.0%	54.6%
3230335	3922.1.1.195 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Pinin_SDK_memA	0.62	43.0	3.95e-01	72.0%	92.7%

D2 medium residues 138-149_359-377_393-466

PDB

Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17417.9 best	Glycoprot_B_PH2	66.6	2.80e-18	64.8%	66.0%

D3 medium residues 150-269

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	144.4	5.40e-42	100.0%	56.7%

D4 medium residues 270-358

PDB

Domain cluster: rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	104.3	1.00e-29	100.0%	41.4%

D5 medium residues 579-661

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	103.8	1.40e-29	100.0%	36.9%