←Back to structures

envelope_glycoprotein_B

Euk-Vir

Elephant_endotheliotropic_herpesvirus_4

envelope_glycoprotein_B__YP_009179298__Elephant_endotheliotropic_herpesvirus_4__548914

Identity

Accession:
YP_009179298 ↗
Protein ID:
envelope_glycoprotein_B
Kingdom:
euk

Quality

68.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_4

TaxID: 548914

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 122-239
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 83.3 2.80e-23 100.0% 56.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 32.0 3.99e-01 94.1% 81.7%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.61 28.0 3.66e-01 94.1% 79.4%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 35.0 3.34e-01 97.5% 49.3%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.55 32.0 3.07e-01 94.1% 48.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.54 36.0 4.18e-01 91.5% 96.4%
1dg6A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 32.0 3.01e-01 97.5% 46.3%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 32.0 3.80e-01 94.1% 90.1%
2kr7A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 34.0 3.75e-01 93.2% 84.0%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 35.0 3.56e-01 92.4% 71.1%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.50e-01 87.3% 74.0%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 31.0 3.23e-01 81.4% 63.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2530507 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.92 88.0 6.91e-01 100.0% 53.4%
1688016 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.91 85.0 6.78e-01 100.0% 54.8%
3889511 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.72 35.0 4.15e-01 93.2% 65.9%
5012930 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 30.0 3.56e-01 90.7% 60.0%
4950854 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 33.0 3.75e-01 92.4% 63.3%
4958415 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.64 36.0 3.73e-01 94.1% 59.1%
426959 11.1.1.132 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YscW 0.63 32.0 3.31e-01 93.2% 52.2%
5046276 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 32.0 3.35e-01 90.7% 53.6%
5033996 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 36.0 2.87e-01 94.9% 27.8%
3243597 10.32.1.277 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF870 0.60 30.0 3.55e-01 90.7% 68.2%
3408652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 3.55e-01 82.2% 50.0%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 34.0 3.63e-01 94.1% 64.4%
3897855 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.59 34.0 2.96e-01 94.1% 38.5%
3411669 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.95e-01 88.1% 72.7%
5014950 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.21e-01 95.8% 49.7%
3238841 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.42e-01 94.9% 58.5%
5077592 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.56e-01 95.8% 64.0%
5028273 11.18.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in metallo-endopeptidase BACOVA_00663 › N-terminal domain in metallo-endopeptidase BACOVA_00663 0.52 34.0 3.65e-01 94.1% 78.0%
5039895 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.48e-01 94.9% 67.5%
4000011 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.69e-01 92.4% 78.1%
4940890 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 29.0 2.86e-01 92.4% 51.2%
D2 medium residues 461-523
PDB
D3 medium residues 562-638
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00606.24 best Glycoprotein_B 79.1 5.00e-22 97.4% 31.1%