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envelope_glycoprotein_B

Euk-Vir

Canid_alphaherpesvirus_1

envelope_glycoprotein_B__YP_009252257__Canid_alphaherpesvirus_1__170325

Identity

Accession:
YP_009252257 ↗
Protein ID:
envelope_glycoprotein_B
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Canid_alphaherpesvirus_1

TaxID: 170325

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 90-113_223-428
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF17417.9 best Glycoprot_B_PH2 103.8 6.90e-30 42.6% 100.0%
PF17416.9 Glycoprot_B_PH1 97.4 1.30e-27 40.4% 42.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.99 48.0 7.04e-01 92.2% 94.2%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.92 43.0 6.56e-01 92.2% 98.2%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.92 43.0 6.59e-01 91.7% 99.1%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.66 18.0 2.91e-01 90.9% 59.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 24.0 3.43e-01 100.0% 75.2%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 16.0 2.63e-01 90.4% 59.5%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.58 22.0 3.20e-01 90.9% 72.4%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 17.0 2.80e-01 91.3% 78.9%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 18.0 2.90e-01 83.9% 80.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932886 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 22.0 3.45e-01 90.9% 65.3%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 27.0 3.58e-01 100.0% 67.7%
3619851 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 20.0 3.17e-01 90.4% 66.7%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 25.0 3.51e-01 100.0% 73.0%
3937459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 27.0 4.02e-01 100.0% 93.0%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 28.0 3.80e-01 100.0% 84.8%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 27.0 3.44e-01 100.0% 72.6%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 28.0 3.86e-01 100.0% 90.8%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.55 25.0 3.52e-01 100.0% 88.2%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 24.0 3.37e-01 100.0% 89.6%
3744629 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.51 25.0 3.43e-01 100.0% 88.8%
D2 medium residues 114-222
PDB
Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17416.9 best Glycoprot_B_PH1 108.4 5.50e-31 100.0% 51.4%