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envelope_glycoprotein_B

Euk-Vir

Spheniscid_alphaherpesvirus_1

envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777

Identity

Accession:: YP_009342376 ↗
Protein ID:: envelope_glycoprotein_B
Kingdom:: euk

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 64-91_492-565

PDB

Domain cluster: rep: hypothetical_protein_BA82_gp099__YP_009001572__Anomala_cuprea_entomopoxvirus__62099__D14-49_268-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	117.4	9.60e-34	76.5%	33.3%

D2 medium residues 92-108_315-424_469-491

PDB

Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17417.9 best	Glycoprot_B_PH2	100.3	8.50e-29	66.0%	100.0%

D3 medium residues 109-232

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	142.2	2.60e-41	100.0%	58.6%

D4 medium residues 233-314

PDB

Domain cluster: rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	83.7	2.10e-23	100.0%	38.6%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bqsA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.60	43.0	3.80e-01	75.6%	91.6%
5lxvA01	2.60.40.680	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	39.0	3.15e-01	78.0%	97.6%
3kxtA00	2.30.30.610	Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7	0.53	33.0	3.82e-01	91.5%	91.1%
1xmxA02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.52	36.0	3.07e-01	73.2%	73.8%
8ew8A01	3.50.70.10	Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase ›	0.52	39.0	2.87e-01	80.5%	75.0%
2e9wB05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	38.0	3.70e-01	78.0%	98.9%
8bxrA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	38.0	3.65e-01	79.3%	95.8%
2iieA01	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.51	34.0	3.19e-01	79.3%	50.9%
5k6xA04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.64e-01	78.0%	95.7%
2kkqA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.38e-01	79.3%	78.4%
2r15A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.54e-01	78.0%	93.8%
4u7mA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	37.0	3.56e-01	78.0%	91.5%
4cbpB02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	37.0	3.47e-01	79.3%	83.7%
4mb4A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	40.0	4.09e-01	85.4%	93.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2530507	220.3.1.3 ↗	beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1	0.96	93.0	6.44e-01	100.0%	37.7%
4476789	3124.1.1.1 ↗	beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC	0.64	40.0	4.61e-01	89.0%	94.5%
5046282	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.59	44.0	3.47e-01	78.0%	83.0%
5036907	3124.1.1.1 ↗	beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC	0.59	38.0	4.25e-01	86.6%	88.3%
3467905	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.58	32.0	3.70e-01	97.6%	76.4%
4940924	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.57	43.0	4.25e-01	95.1%	76.5%
3502069	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.57	40.0	3.29e-01	74.4%	55.0%
1005444	295.2.1.1 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › Outer surface protein E › Outer surface protein E › OspE	0.56	48.0	4.01e-01	98.8%	70.9%
3538869	220.1.1.66 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH	0.55	39.0	3.17e-01	95.1%	37.6%
3691310	511.1.1.0 ↗	beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain	0.55	38.0	3.29e-01	72.0%	66.4%
4955022	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	44.0	3.83e-01	90.2%	92.3%
None	—		0.53	45.0	3.00e-01	98.8%	91.8%
3838434	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.52	43.0	3.59e-01	90.2%	69.7%
4192693	220.1.1.76 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2	0.52	39.0	3.87e-01	96.3%	78.8%
3308208	2003.1.2.2 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N	0.51	43.0	2.87e-01	98.8%	90.9%
4971344	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	29.0	3.49e-01	89.0%	92.0%
3483288	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	40.0	3.51e-01	87.8%	77.7%

D5 medium residues 566-653

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	103.2	2.10e-29	100.0%	38.7%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gumB01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.94	89.0	8.42e-01	100.0%	87.0%
3fvcA01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.93	66.0	6.92e-01	95.5%	80.0%
1ne3A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.56	29.0	3.24e-01	76.1%	61.8%
7jvhC01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.56	48.0	3.33e-01	100.0%	84.1%
5ocqA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	47.0	3.37e-01	96.6%	50.9%
5ocrA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	47.0	3.36e-01	96.6%	54.7%
2jo6A00	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.54	33.0	3.07e-01	100.0%	48.2%
4bpzA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	45.0	3.30e-01	95.5%	55.4%
7szeB01	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.53	30.0	2.81e-01	72.7%	45.8%
8ep4C01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	44.0	3.20e-01	96.6%	50.2%
3zpyB00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	37.0	2.76e-01	77.3%	94.3%
1mveA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	44.0	3.29e-01	100.0%	52.1%
3nvqA01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	44.0	2.85e-01	100.0%	39.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2488247	4300.1.1.1 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B	0.94	87.0	6.52e-01	100.0%	45.5%
3276265	7054.1.1.0 ↗		0.55	40.0	3.57e-01	94.3%	51.1%
3251298	76.1.1.0 ↗	beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I	0.54	42.0	3.32e-01	85.2%	72.8%
1764950	10.1.1.11 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16	0.53	38.0	3.00e-01	76.1%	98.5%
3510464	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.51	45.0	3.02e-01	100.0%	31.9%
2990561	10.1.1.74 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275	0.51	44.0	3.20e-01	97.7%	47.5%
4945010	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.51	44.0	3.06e-01	100.0%	58.2%
3515797	5.1.4.6 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40	0.51	44.0	3.08e-01	97.7%	89.6%