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envelope_glycoprotein_B
Euk-VirMurine_roseolovirus
envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555
Identity
- Accession:
- YP_009344884 ↗
- Protein ID:
- envelope_glycoprotein_B
- Kingdom:
- euk
Quality
71.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Roseolovirus›
Murine_roseolovirus
TaxID: 1940555
Cluster
View cluster (42 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 497-585
Domain cluster:
rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 111.4 | 6.40e-32 | 100.0% | 37.4% |
D2
medium
residues 26-53_427-496
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 98.8 | 4.50e-28 | 76.5% | 32.9% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gumA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.87 | 69.0 | 6.85e-01 | 82.7% | 100.0% |
| 3fvcA02 | 1.20.5.1890 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.85 | 67.0 | 6.66e-01 | 81.6% | 100.0% |
| 3duzA03 | 6.10.250.3010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 54.0 | 5.95e-01 | 71.4% | 90.9% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.62 | 30.0 | 3.55e-01 | 77.6% | 66.2% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 28.0 | 3.13e-01 | 79.6% | 56.0% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 27.0 | 3.09e-01 | 79.6% | 61.4% |
| 6lcqA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.53 | 29.0 | 3.59e-01 | 84.7% | 92.6% |
| 2hf2B02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 26.0 | 2.60e-01 | 79.6% | 40.2% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 25.0 | 2.70e-01 | 79.6% | 48.9% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 24.0 | 2.56e-01 | 80.6% | 48.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2488247 | 4300.1.1.1 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B | 0.87 | 75.0 | 5.87e-01 | 100.0% | 47.1% |
| 3966338 | 327.16.1.19 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › NRho | 0.53 | 23.0 | 3.02e-01 | 79.6% | 70.9% |
| 3603400 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.53 | 29.0 | 3.30e-01 | 77.6% | 70.7% |
| 4058893 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.53 | 25.0 | 2.72e-01 | 73.5% | 50.6% |
| 3579956 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.53 | 28.0 | 3.28e-01 | 79.6% | 71.4% |
D3
medium
residues 65-80_208-233_290-390
Domain cluster:
rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391
D4
medium
residues 81-138_150-207
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 106.1 | 3.00e-30 | 100.0% | 56.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.67 | 34.0 | 3.53e-01 | 98.3% | 51.9% |
| 7ui8A01 | 2.60.40.3930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 34.0 | 3.68e-01 | 94.8% | 59.8% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.61 | 30.0 | 3.89e-01 | 94.8% | 84.1% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.61 | 29.0 | 3.15e-01 | 91.4% | 53.5% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 37.0 | 3.02e-01 | 93.1% | 38.9% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.37e-01 | 94.8% | 60.0% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.07e-01 | 94.8% | 52.8% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.53 | 26.0 | 3.36e-01 | 93.1% | 85.0% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.53 | 36.0 | 4.01e-01 | 95.7% | 95.2% |
| 2vldB01 | 2.70.180.20 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › | 0.51 | 32.0 | 3.26e-01 | 94.8% | 61.9% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.50 | 33.0 | 3.51e-01 | 81.9% | 74.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.92 | 87.0 | 6.93e-01 | 100.0% | 54.8% |
| 2530507 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.91 | 87.0 | 6.74e-01 | 100.0% | 53.4% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.69 | 42.0 | 5.21e-01 | 94.8% | 100.0% |
| 3733271 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.65 | 41.0 | 3.68e-01 | 98.3% | 47.1% |
| 4950854 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 33.0 | 3.73e-01 | 93.1% | 64.4% |
| 5062273 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.63 | 36.0 | 3.47e-01 | 94.0% | 50.8% |
| 5050550 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 35.0 | 3.47e-01 | 97.4% | 52.5% |
| 185186 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.58 | 50.0 | 4.51e-01 | 99.1% | 68.4% |
| 2124211 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.58 | 48.0 | 4.35e-01 | 96.6% | 65.0% |
| 2464208 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.58 | 48.0 | 4.36e-01 | 96.6% | 65.6% |
| 3408652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 3.55e-01 | 81.9% | 50.6% |
| 2124201 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.57 | 48.0 | 4.39e-01 | 98.3% | 67.7% |
| 3411669 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 38.0 | 3.97e-01 | 87.1% | 72.7% |
| 5074083 | 11.1.1.91 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Spo0M | 0.57 | 36.0 | 3.38e-01 | 96.6% | 51.0% |
| 5014950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.35e-01 | 96.6% | 50.3% |
| 3915600 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.55 | 34.0 | 1.95e-01 | 91.4% | 7.5% |
| 3927415 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 33.0 | 3.53e-01 | 94.8% | 67.3% |
| 4958415 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.54 | 36.0 | 3.68e-01 | 82.8% | 70.0% |
| 3238841 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 3.37e-01 | 94.8% | 58.5% |
| 3243337 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 33.0 | 3.40e-01 | 97.4% | 63.5% |
| 5077592 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 3.55e-01 | 97.4% | 65.6% |
| 5005662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.07e-01 | 96.6% | 50.3% |
| 4000011 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.68e-01 | 93.1% | 79.0% |
D5
medium
residues 618-672