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envelope_glycoprotein_B
Euk-VirSuid_alphaherpesvirus_1
envelope_glycoprotein_B__YP_068330__Suid_alphaherpesvirus_1__10345
Identity
- Accession:
- YP_068330 ↗
- Protein ID:
- envelope_glycoprotein_B
- Kingdom:
- euk
Quality
68.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Suid_alphaherpesvirus_1
TaxID: 10345
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 109-133_596-685
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 104.6 | 7.60e-30 | 81.7% | 41.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gumB01 | 2.30.30.1230 | Mainly Beta › Roll › SH3 type barrels. › | 0.92 | 73.0 | 7.88e-01 | 90.4% | 94.0% |
| 3fvcA01 | 2.30.30.1230 | Mainly Beta › Roll › SH3 type barrels. › | 0.90 | 58.0 | 7.01e-01 | 90.4% | 95.0% |
| 3deeA02 | 3.90.930.50 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.61 | 31.0 | 3.19e-01 | 80.0% | 48.2% |
| 3aiiA03 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.54 | 32.0 | 3.50e-01 | 100.0% | 73.0% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 31.0 | 3.74e-01 | 87.0% | 90.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2488247 | 4300.1.1.1 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B | 0.89 | 85.0 | 7.01e-01 | 100.0% | 92.0% |
| 3537702 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.57 | 35.0 | 3.28e-01 | 94.8% | 47.9% |
| 3713034 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 35.0 | 2.45e-01 | 71.3% | 68.6% |
D2
medium
residues 152-165_374-484
Domain cluster:
rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17417.9 best | Glycoprot_B_PH2 | 83.2 | 2.00e-23 | 80.0% | 100.0% |
D3
medium
residues 166-284
Domain cluster:
rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 136.7 | 1.20e-39 | 100.0% | 56.2% |
D4
medium
residues 285-373
Domain cluster:
rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 99.5 | 3.00e-28 | 100.0% | 41.4% |
D5
medium
residues 532-595
Domain cluster:
rep: envelope_glycoprotein_B__YP_164470__Cercopithecine_alphaherpesvirus_2__10317__D479-549
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 93.8 | 1.50e-26 | 100.0% | 28.8% |