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envelope_glycoprotein_D

Euk-Vir

Psittacid_alphaherpesvirus_1

envelope_glycoprotein_D__NP_944448__Psittacid_alphaherpesvirus_1__50294

Identity

Accession:
NP_944448 ↗
Protein ID:
envelope_glycoprotein_D
Kingdom:
euk

Quality

62.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Psittacid_alphaherpesvirus_1

TaxID: 50294

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-267
PDB
Domain cluster: rep: US6__YP_003084434__Anatid_alphaherpesvirus_1__104388__D49-60_94-271
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01537.24 best Herpes_glycop_D 44.8 2.40e-11 55.3% 94.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lsaC01 2.70.230.10 Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › 0.86 76.0 7.94e-01 91.6% 99.5%
1jmaA00 2.70.230.10 Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › 0.83 80.0 7.62e-01 100.0% 98.1%
2kkqA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.78 34.0 4.85e-01 82.7% 82.8%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.77 34.0 5.07e-01 83.2% 92.3%
4depC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 35.0 5.15e-01 89.8% 100.0%
1pkoA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 39.0 5.23e-01 83.2% 94.4%
2nmsA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 37.0 5.17e-01 83.2% 98.2%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 32.0 4.48e-01 84.5% 96.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
292894 11.1.1.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D 0.86 80.0 7.42e-01 98.7% 79.2%
291005 11.1.1.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D 0.86 80.0 7.43e-01 99.1% 79.6%
1389350 11.1.1.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D 0.86 66.0 7.43e-01 84.1% 100.0%
2630585 11.1.1.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D 0.85 78.0 7.66e-01 99.6% 90.0%
2712144 11.1.1.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D 0.84 79.0 7.65e-01 97.3% 96.7%
3563753 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.81 42.0 5.78e-01 81.0% 93.6%
3901137 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.78 33.0 5.10e-01 82.3% 94.7%
3513780 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.78 35.0 5.18e-01 87.6% 92.4%
3558802 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.78 34.0 4.84e-01 84.1% 82.6%
3907311 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.75 34.0 4.60e-01 82.7% 78.4%
4000993 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.75 39.0 5.17e-01 88.9% 90.4%
3909143 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.74 34.0 4.52e-01 86.7% 76.2%
3888080 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.72 41.0 4.00e-01 90.3% 51.9%
3996784 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.70 34.0 4.74e-01 88.9% 90.0%
3566417 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 33.0 3.25e-01 88.9% 44.8%
3757215 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 36.0 4.71e-01 83.2% 94.1%
3902921 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.29e-01 72.1% 95.5%
3886725 11.1.1.271 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_6 0.57 37.0 4.34e-01 88.5% 90.3%
3905924 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.18e-01 87.2% 73.2%
3860562 11.1.1.84 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SLAM 0.50 40.0 4.37e-01 87.2% 96.4%