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envelope_glycoprotein_D
Euk-VirFalconid_herpesvirus_1
envelope_glycoprotein_D__YP_009046593__Falconid_herpesvirus_1__1510155
Identity
- Accession:
- YP_009046593 ↗
- Protein ID:
- envelope_glycoprotein_D
- Kingdom:
- euk
Quality
68.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Falconid_herpesvirus_1
TaxID: 1510155
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 64-96_109-169_195-220_244-254
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01537.24 best | Herpes_glycop_D | 53.9 | 3.60e-14 | 73.3% | 54.2% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6lsaC01 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.88 | 81.0 | 6.77e-01 | 96.9% | 91.8% |
| 1jmaA00 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.87 | 82.0 | 6.39e-01 | 100.0% | 75.3% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 48.0 | 4.91e-01 | 72.5% | 98.4% |
| 3u83A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 46.0 | 5.02e-01 | 70.2% | 100.0% |
| 2petA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 4.98e-01 | 73.3% | 97.4% |
| 1xt5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 46.0 | 4.62e-01 | 73.3% | 94.8% |
| 2jjsC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 44.0 | 4.73e-01 | 73.3% | 98.3% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.61 | 44.0 | 3.41e-01 | 74.8% | 71.8% |
| 5edxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.41e-01 | 71.8% | 96.5% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.58 | 40.0 | 3.90e-01 | 70.2% | 81.2% |
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 44.0 | 3.42e-01 | 80.2% | 71.7% |
| 7lfbH01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 4.14e-01 | 71.0% | 98.3% |
| 4gkpB00 | 3.40.850.20 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › | 0.57 | 40.0 | 3.22e-01 | 73.3% | 45.3% |
| 1a9xA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 41.0 | 3.49e-01 | 79.4% | 76.5% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 4.06e-01 | 71.0% | 86.2% |
| 3tw6C01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 41.0 | 2.87e-01 | 80.2% | 52.7% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 41.0 | 3.55e-01 | 80.2% | 75.4% |
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 4.01e-01 | 75.6% | 95.5% |
| 4fflA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 41.0 | 3.31e-01 | 84.7% | 66.8% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.92e-01 | 72.5% | 99.1% |
| 4gs7C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.98e-01 | 71.0% | 93.9% |
| 4trkA00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 38.0 | 3.11e-01 | 77.9% | 69.4% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.66e-01 | 80.2% | 86.5% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 38.0 | 3.32e-01 | 77.9% | 74.0% |
| 4hnvB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 39.0 | 2.88e-01 | 80.2% | 52.0% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.95e-01 | 73.3% | 98.0% |
| 5c50B00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.50 | 37.0 | 3.32e-01 | 77.1% | 75.1% |
| 4yk8B00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.50 | 37.0 | 3.28e-01 | 77.1% | 72.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 292894 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.87 | 83.0 | 6.31e-01 | 100.0% | 70.8% |
| 2712144 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.87 | 83.0 | 6.53e-01 | 100.0% | 79.5% |
| 291005 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.87 | 82.0 | 6.25e-01 | 100.0% | 70.8% |
| 2630585 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.85 | 81.0 | 6.42e-01 | 100.0% | 79.7% |
| 1389350 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.85 | 77.0 | 6.83e-01 | 94.7% | 100.0% |
| 3908446 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.70 | 50.0 | 3.94e-01 | 74.0% | 74.5% |
| 4531428 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.67 | 48.0 | 4.25e-01 | 73.3% | 67.8% |
| 4994864 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 47.0 | 4.66e-01 | 73.3% | 97.0% |
| 1221283 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.65 | 46.0 | 4.62e-01 | 73.3% | 94.8% |
| 3566614 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 45.0 | 4.68e-01 | 73.3% | 97.6% |
| 3914630 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.64 | 52.0 | 4.05e-01 | 85.5% | 63.8% |
| 3526095 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.64 | 47.0 | 4.46e-01 | 75.6% | 78.0% |
| 4085770 | 11.1.1.1293 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set, CD4-extracel | 0.64 | 45.0 | 3.85e-01 | 74.0% | 53.5% |
| 3566162 | 11.1.1.375 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD | 0.61 | 43.0 | 2.71e-01 | 71.0% | 29.8% |
| 4048083 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.61 | 44.0 | 3.74e-01 | 74.0% | 69.0% |
| 4865058 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 41.0 | 4.62e-01 | 70.2% | 93.2% |
| 5069601 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.59 | 41.0 | 4.44e-01 | 71.0% | 91.8% |
| 3785531 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 43.0 | 2.97e-01 | 77.1% | 38.0% |
| 5044405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 4.44e-01 | 73.3% | 98.2% |
| 5057979 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 40.0 | 3.42e-01 | 72.5% | 97.2% |
| 4491474 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.57 | 42.0 | 3.79e-01 | 77.1% | 76.1% |
| 3574796 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 4.04e-01 | 72.5% | 78.5% |
| 5035524 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.56 | 42.0 | 3.51e-01 | 79.4% | 94.3% |
| 5023429 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.55 | 43.0 | 3.47e-01 | 83.2% | 89.6% |
| 4680848 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.55 | 43.0 | 3.43e-01 | 83.2% | 78.9% |
| 5055930 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 4.24e-01 | 71.8% | 95.0% |
| 1837665 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.54 | 44.0 | 3.77e-01 | 84.7% | 97.5% |
| 3511589 | 11.2.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin | 0.54 | 44.0 | 3.60e-01 | 84.7% | 84.8% |
| 5041422 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.54 | 39.0 | 3.44e-01 | 73.3% | 90.5% |
| None | — | 0.54 | 43.0 | 2.86e-01 | 85.5% | 39.3% | |
| 3573566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.82e-01 | 73.3% | 76.3% |
| 3800576 | 11.2.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin | 0.53 | 42.0 | 3.47e-01 | 82.4% | 64.3% |
| 5039956 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.53 | 42.0 | 3.72e-01 | 83.2% | 78.4% |
| 3515983 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 37.0 | 3.20e-01 | 73.3% | 66.7% |
| 4932969 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.52 | 39.0 | 3.24e-01 | 79.4% | 90.0% |
| 3251320 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 38.0 | 3.16e-01 | 78.6% | 74.5% |
| 3191862 | 10.32.1.252 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7371 | 0.51 | 37.0 | 3.32e-01 | 73.3% | 89.4% |
| 5020794 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.51 | 40.0 | 3.26e-01 | 83.2% | 83.1% |
| 5083402 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 41.0 | 3.67e-01 | 85.5% | 78.9% |
| 3802928 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.51 | 40.0 | 3.16e-01 | 84.7% | 88.1% |
| 3220829 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 4.02e-01 | 90.8% | 82.3% |
D2
medium
residues 97-108_170-194_221-243_255-281
Domain cluster:
rep: envelope_glycoprotein_D__YP_009342421__Spheniscid_alphaherpesvirus_1__2560777__D94-104_169-189_217-228_254-281
CATH (2)
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2630585 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.88 | 83.0 | 5.82e-01 | 100.0% | 78.8% |
| 291005 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.87 | 81.0 | 5.54e-01 | 100.0% | 68.6% |
| 292894 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.87 | 81.0 | 5.53e-01 | 100.0% | 68.6% |
| 2712144 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.86 | 78.0 | 5.54e-01 | 97.7% | 76.2% |
| 3220597 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.56 | 43.0 | 2.67e-01 | 83.9% | 57.7% |
| 3768984 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 41.0 | 2.72e-01 | 86.2% | 85.2% |
| 3586444 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.50 | 36.0 | 3.29e-01 | 77.0% | 85.8% |