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envelope_glycoprotein_D
Euk-VirCanid_alphaherpesvirus_1
envelope_glycoprotein_D__YP_009252295__Canid_alphaherpesvirus_1__170325
Identity
- Accession:
- YP_009252295 ↗
- Protein ID:
- envelope_glycoprotein_D
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Canid_alphaherpesvirus_1
TaxID: 170325
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-236
Domain cluster:
rep: envelope_glycoprotein_G__YP_009230198__Leporid_alphaherpesvirus_4__481315__D34-222
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01537.24 best | Herpes_glycop_D | 127.2 | 6.50e-37 | 60.6% | 100.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6lsaC01 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.91 | 88.0 | 8.82e-01 | 99.5% | 100.0% |
| 1jmaA00 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.88 | 85.0 | 7.81e-01 | 100.0% | 80.3% |
| 4cbpB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.80 | 37.0 | 5.26e-01 | 90.9% | 89.4% |
| 2enyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 33.0 | 4.73e-01 | 90.9% | 87.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2630585 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.91 | 87.0 | 8.19e-01 | 100.0% | 85.1% |
| 2712144 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.89 | 87.0 | 8.13e-01 | 100.0% | 85.7% |
| 292894 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.88 | 85.0 | 7.62e-01 | 100.0% | 75.9% |
| 291005 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.88 | 85.0 | 7.57e-01 | 100.0% | 75.9% |
| 1389350 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.86 | 71.0 | 7.71e-01 | 90.9% | 100.0% |
| 3226713 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.70 | 36.0 | 4.89e-01 | 70.2% | 91.3% |
| 3755906 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.62 | 38.0 | 3.82e-01 | 73.1% | 59.1% |
| 3886725 | 11.1.1.271 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_6 | 0.58 | 40.0 | 4.51e-01 | 91.3% | 88.5% |
| 3515596 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 38.0 | 3.72e-01 | 75.5% | 70.5% |