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envelope_glycoprotein_D
Euk-VirPapiine_alphaherpesvirus_2
envelope_glycoprotein_D__YP_443912__Papiine_alphaherpesvirus_2__340907
Identity
- Accession:
- YP_443912 ↗
- Protein ID:
- envelope_glycoprotein_D
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Papiine_alphaherpesvirus_2
TaxID: 340907
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-283
Domain cluster:
rep: envelope_glycoprotein_G__YP_009230198__Leporid_alphaherpesvirus_4__481315__D34-222
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01537.24 best | Herpes_glycop_D | 107.4 | 9.40e-31 | 51.6% | 99.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jmaA00 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.95 | 94.0 | 9.15e-01 | 100.0% | 94.2% |
| 6lsaC01 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.90 | 75.0 | 8.18e-01 | 85.2% | 100.0% |
| 2giyB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 42.0 | 4.98e-01 | 84.0% | 91.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 291005 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.97 | 91.0 | 8.68e-01 | 95.5% | 84.7% |
| 292894 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.97 | 91.0 | 8.68e-01 | 95.9% | 85.0% |
| 1389350 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.95 | 67.0 | 8.02e-01 | 76.6% | 100.0% |
| 2630585 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.88 | 83.0 | 8.37e-01 | 98.4% | 97.9% |
| 2712144 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.86 | 80.0 | 8.09e-01 | 95.9% | 95.9% |
| 3910830 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.84 | 37.0 | 4.04e-01 | 82.4% | 50.7% |
| 3889157 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.79 | 33.0 | 5.16e-01 | 77.5% | 93.3% |
| 2723161 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.75 | 32.0 | 5.13e-01 | 83.6% | 100.0% |
| 3937467 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.72 | 33.0 | 4.98e-01 | 82.8% | 95.7% |
| 3996784 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.72 | 34.0 | 4.97e-01 | 85.2% | 95.0% |
| 3886725 | 11.1.1.271 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_6 | 0.57 | 35.0 | 4.29e-01 | 80.7% | 90.3% |
| 3541457 | 11.1.1.896 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, I-set | 0.51 | 36.0 | 3.40e-01 | 79.1% | 61.8% |