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envelope_glycoprotein_H

Euk-Vir

Elephant_endotheliotropic_herpesvirus_5

envelope_glycoprotein_H__YP_009052002__Elephant_endotheliotropic_herpesvirus_5__768738

Identity

Accession:: YP_009052002 ↗
Protein ID:: envelope_glycoprotein_H
Kingdom:: euk

Quality

57.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_5

TaxID: 768738

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 288-376

PDB

D2 medium residues 377-492

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t98A02	1.20.58.590	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain	0.71	51.0	4.56e-01	75.0%	100.0%
4gyvE00	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.67	51.0	4.18e-01	80.2%	79.1%
4i1eA03	1.25.10.30	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain	0.66	49.0	4.69e-01	79.3%	95.7%
3fp3A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.65	45.0	4.36e-01	97.4%	61.5%
5ux1D00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.62	43.0	3.63e-01	70.7%	75.1%
6fndA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	54.0	4.66e-01	98.3%	93.0%
3r2qA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	46.0	4.67e-01	79.3%	84.1%
2ntxA02	1.20.58.1310	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2	0.59	42.0	4.44e-01	75.9%	82.5%
2mpkA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.58	37.0	4.23e-01	70.7%	98.6%
4ib4A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.58	46.0	3.47e-01	85.3%	59.6%
2v5cA03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.57	41.0	3.99e-01	75.9%	74.6%
4mdvB03	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.56	37.0	4.12e-01	81.0%	87.9%
2xgvA00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.54	38.0	3.67e-01	75.9%	63.2%
3zevB00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	43.0	3.21e-01	85.3%	78.3%
2erbA01	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.53	34.0	3.51e-01	95.7%	69.2%
2imsA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.51	36.0	3.29e-01	73.3%	57.7%
1n93X01	1.10.3040.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1	0.51	44.0	3.73e-01	97.4%	89.9%
7sf8A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	40.0	3.21e-01	84.5%	62.7%
2wcjA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.51	37.0	3.50e-01	95.7%	63.1%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3704864	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.77	58.0	5.77e-01	77.6%	84.2%
3710423	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.77	60.0	5.83e-01	80.2%	83.2%
3516162	603.1.1.23 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Sec20	0.75	57.0	4.95e-01	79.3%	80.6%
3237006	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.68	51.0	5.17e-01	79.3%	82.6%
3245201	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.67	51.0	4.79e-01	79.3%	67.9%
3789688	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.67	50.0	4.92e-01	78.4%	75.2%
3816842	109.4.1.498 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487	0.62	52.0	3.28e-01	100.0%	16.7%
3909548	174.1.1.43 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20	0.58	46.0	4.11e-01	84.5%	83.6%
4012024	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.57	52.0	3.90e-01	99.1%	79.3%
3199872	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.57	43.0	4.60e-01	86.2%	95.0%
3441169	159.1.1.2 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG-like	0.55	35.0	3.45e-01	85.3%	58.4%
3566007	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.54	45.0	4.58e-01	98.3%	91.3%
None	—		0.53	42.0	2.98e-01	86.2%	65.0%
3278217	159.1.1.2 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG-like	0.53	37.0	3.67e-01	95.7%	69.2%
3231966	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.51	41.0	3.04e-01	84.5%	64.7%
4174198	101.1.6.4 ↗	alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C	0.51	33.0	3.51e-01	77.6%	76.0%

D3 medium residues 493-566

PDB

D4 medium residues 567-706

PDB

Domain cluster: rep: UL22__YP_003084400__Anatid_alphaherpesvirus_1__104388__D647-783

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17488.8 best	Herpes_glycoH_C	77.6	1.10e-21	95.0%	94.3%