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envelope_glycoprotein_H

Euk-Vir

Wood_mouse_herpesvirus

envelope_glycoprotein_H__YP_010085897__Wood_mouse_herpesvirus__432370

Identity

Accession:: YP_010085897 ↗
Protein ID:: envelope_glycoprotein_H
Kingdom:: euk

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Wood_mouse_herpesvirus

TaxID: 432370

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69

PDB

D2 high residues 549-694

PDB

Domain cluster: rep: UL22__YP_003084400__Anatid_alphaherpesvirus_1__104388__D647-783

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17488.8 best	Herpes_glycoH_C	144.4	2.70e-42	96.6%	98.6%

D3 medium residues 103-253

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02489.22 best	Herpes_glycop_H	34.8	1.10e-08	99.3%	28.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5w0kA01	3.90.380.20	Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II	0.78	73.0	5.58e-01	100.0%	46.2%
1y8cA02	2.20.25.110	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases	0.67	27.0	4.34e-01	88.7%	96.7%
3ci0K01	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.55	29.0	3.41e-01	94.0%	72.1%
4dm5A00	3.30.1450.10	Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 ›	0.54	23.0	2.97e-01	100.0%	67.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2701125	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.84	76.0	5.12e-01	100.0%	29.0%
2095478	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.77	71.0	4.81e-01	100.0%	29.5%
4639080	274.1.1.0 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits	0.55	29.0	3.17e-01	94.0%	59.2%
4956970	331.10.2.1 ↗	a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc	0.53	39.0	4.44e-01	93.4%	100.0%

D4 medium residues 433-547

PDB

Domain cluster: rep: envelope_glycoprotein_H__YP_009388523__Common_bottlenose_dolphin_gammaherpesvirus_1_strain_Sarasota__2022783__D447-588

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02489.22 best	Herpes_glycop_H	80.1	2.00e-22	100.0%	22.9%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1f59A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.60	51.0	3.50e-01	95.7%	38.2%
6tblB01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.57	45.0	4.65e-01	100.0%	89.2%
1bk6A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	45.0	3.07e-01	100.0%	23.9%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	38.0	3.62e-01	73.0%	60.6%
4rv1F00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.54	44.0	3.05e-01	100.0%	24.8%
3tdoA00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.54	41.0	3.28e-01	83.5%	92.2%
3s0aA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.53	37.0	3.67e-01	100.0%	69.7%
6tkyA03	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.53	43.0	4.28e-01	90.4%	99.2%
5jajA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.52	29.0	2.94e-01	98.3%	51.7%
3d3mA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	44.0	4.02e-01	96.5%	75.2%
6qlyA02	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.51	36.0	3.91e-01	88.7%	88.7%
7cafA01	1.10.3720.10	Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like	0.51	37.0	2.88e-01	75.7%	57.3%
1dqeA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.51	38.0	3.66e-01	100.0%	67.2%
2qeuB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.51	44.0	4.24e-01	95.7%	90.2%
3vhlA02	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.51	42.0	4.18e-01	91.3%	100.0%
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.50	34.0	3.65e-01	88.7%	80.4%
1gveB00	3.20.20.100	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain	0.50	37.0	2.77e-01	96.5%	29.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2701125	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.91	84.0	5.27e-01	100.0%	22.1%
2095476	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.81	75.0	4.67e-01	100.0%	22.7%
1554358	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.74	67.0	4.22e-01	100.0%	22.9%
3275755	109.4.1.435 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_N	0.59	54.0	5.05e-01	100.0%	95.0%
3878063	109.4.1.1310 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N	0.55	49.0	3.95e-01	99.1%	51.8%
3705246	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	48.0	3.58e-01	100.0%	58.4%
4966184	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.53	38.0	4.15e-01	97.4%	90.5%
3640510	188.1.1.5 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Tcp11	0.53	45.0	3.43e-01	92.2%	45.1%
3858331	601.1.1.6 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TLN1-like_RS	0.52	36.0	3.35e-01	100.0%	54.2%
3610921	604.5.1.36 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › UPF0220	0.52	36.0	3.54e-01	99.1%	65.4%
4174547	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.50	42.0	4.15e-01	100.0%	83.2%
3554580	197.1.1.1 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M	0.50	37.0	3.87e-01	94.8%	84.8%
3220832	592.7.1.1 ↗	alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2	0.50	36.0	3.93e-01	97.4%	94.4%
3992442	592.7.1.1 ↗	alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2	0.50	36.0	4.03e-01	95.7%	100.0%
3750030	604.12.1.15 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Mito_morph_reg	0.50	34.0	3.66e-01	99.1%	86.7%