←Back to structures
envelope_glycoprotein_J
Euk-VirEquid_alphaherpesvirus_9
envelope_glycoprotein_J__YP_002333552__Equid_alphaherpesvirus_9__55744
Identity
- Accession:
- YP_002333552 ↗
- Protein ID:
- envelope_glycoprotein_J
- Kingdom:
- euk
Quality
45.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_9
TaxID: 55744
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 591-692
Domain cluster:
rep: ORF36__YP_656544__Ranid_herpesvirus_2__389214__D164-249
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05955.17 best | Herpes_gp2 | 173.9 | 5.50e-51 | 91.2% | 41.1% |
D2
medium
residues 716-767
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05955.17 best | Herpes_gp2 | 86.6 | 2.60e-24 | 100.0% | 21.2% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 62.0 | 5.29e-01 | 94.2% | 57.6% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 60.0 | 4.84e-01 | 96.2% | 78.8% |
| 2ddzE00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.66 | 52.0 | 3.60e-01 | 90.4% | 43.7% |
| 8dhaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 3.99e-01 | 82.7% | 89.7% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 44.0 | 3.71e-01 | 86.5% | 57.6% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 32.0 | 3.64e-01 | 71.2% | 81.1% |
| 7s7rA01 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 3.01e-01 | 80.8% | 69.3% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.53 | 42.0 | 3.68e-01 | 92.3% | 87.1% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.53 | 41.0 | 3.79e-01 | 92.3% | 96.0% |
| 1gkkA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 38.0 | 2.50e-01 | 82.7% | 30.4% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 40.0 | 2.54e-01 | 90.4% | 42.6% |
| 2zyzB02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 39.0 | 3.25e-01 | 84.6% | 92.6% |
| 1fi8C00 | 2.60.40.550 | Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin | 0.51 | 39.0 | 3.49e-01 | 86.5% | 84.6% |
| 5umbA02 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.51 | 35.0 | 3.29e-01 | 78.8% | 78.7% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.51 | 37.0 | 2.93e-01 | 86.5% | 71.1% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.51 | 34.0 | 2.36e-01 | 71.2% | 73.7% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.81e-01 | 88.5% | 42.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689305 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 63.0 | 4.79e-01 | 100.0% | 45.6% |
| 3394051 | 12.2.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C | 0.63 | 49.0 | 3.46e-01 | 90.4% | 27.9% |
| 3918382 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.58 | 41.0 | 2.42e-01 | 80.8% | 18.4% |
| 376155 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.58 | 45.0 | 3.09e-01 | 86.5% | 25.5% |
| 5066057 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.55 | 44.0 | 3.65e-01 | 86.5% | 56.7% |
| 4964750 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.52 | 35.0 | 2.68e-01 | 73.1% | 80.0% |
| 3915702 | 3426.1.1.1 ↗ | beta meanders › Telethonin › Telethonin › Telethonin › Telethonin | 0.51 | 38.0 | 3.26e-01 | 82.7% | 77.8% |
| 4117447 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.51 | 36.0 | 2.38e-01 | 76.9% | 40.3% |
| 5022074 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.50 | 37.0 | 2.57e-01 | 84.6% | 22.5% |