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envelope_glycoprotein_L

Euk-Vir

Gallid_alphaherpesvirus_2

envelope_glycoprotein_L__YP_001033929__Gallid_alphaherpesvirus_2__10390

Identity

Accession:
YP_001033929 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

60.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-139
PDB
Domain cluster: rep: envelope_glycoprotein_L__YP_002333543__Equid_alphaherpesvirus_9__55744__D39-137
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05259.17 best Herpes_UL1 121.4 2.40e-35 89.3% 100.0%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.80 66.0 6.77e-01 87.5% 98.2%
4qmaA01 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.72 29.0 4.49e-01 70.5% 100.0%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.71 32.0 3.50e-01 94.6% 50.5%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.69 52.0 5.48e-01 82.1% 88.9%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 35.0 4.40e-01 79.5% 86.8%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 34.0 4.37e-01 77.7% 93.3%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.64 33.0 3.72e-01 73.2% 63.1%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.64 30.0 4.14e-01 73.2% 97.9%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 33.0 4.25e-01 78.6% 95.1%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.61 32.0 3.40e-01 99.1% 54.9%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.60 31.0 3.61e-01 96.4% 69.6%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 28.0 3.58e-01 90.2% 79.7%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.57 35.0 3.85e-01 95.5% 75.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 34.0 3.39e-01 83.9% 55.2%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 25.0 3.22e-01 93.8% 71.2%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.87e-01 73.2% 84.4%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 29.0 3.27e-01 79.5% 64.0%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 34.0 4.12e-01 97.3% 93.3%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 36.0 2.68e-01 73.2% 91.7%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 26.0 3.20e-01 84.8% 76.8%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.52 38.0 3.69e-01 94.6% 68.8%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 27.0 2.74e-01 78.6% 47.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.50 29.0 3.38e-01 91.1% 83.6%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.50 35.0 4.06e-01 76.8% 95.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095477 1170.1.2.2 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.79 71.0 6.58e-01 97.3% 91.4%
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.77 71.0 6.69e-01 98.2% 87.1%
3531403 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.77 35.0 5.17e-01 99.1% 98.0%
4385616 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 35.0 3.43e-01 76.8% 45.8%
3521820 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 36.0 2.77e-01 76.8% 27.7%
3761838 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.62 34.0 3.42e-01 80.4% 52.2%
3534511 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 34.0 3.04e-01 80.4% 40.6%
3800736 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 41.0 2.98e-01 78.6% 82.6%
4378106 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.55 36.0 3.61e-01 87.5% 64.3%
4991670 4163.1.2.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like 0.53 35.0 3.63e-01 84.8% 71.4%
3753969 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.53 41.0 4.35e-01 89.3% 92.0%
None — 0.52 33.0 2.62e-01 77.7% 31.6%
3226467 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 39.0 3.71e-01 89.3% 66.7%
3789602 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.39e-01 71.4% 73.6%