←Back to structures

envelope_glycoprotein_L

Euk-Vir

Aotine_betaherpesvirus_1

envelope_glycoprotein_L__YP_004940124__Aotine_betaherpesvirus_1__50290

Identity

Accession:
YP_004940124 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

64.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-183
PDB
Domain cluster: rep: envelope_glycoprotein_L__YP_081555__Human_betaherpesvirus_5__10359__D73-193
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01801.22 best Cytomega_gL 151.3 3.60e-44 100.0% 61.1%
D2 medium residues 185-227
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01801.22 best Cytomega_gL 28.3 1.60e-06 100.0% 17.5%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.85 66.0 4.57e-01 83.7% 27.5%
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.78 64.0 4.84e-01 97.7% 38.0%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.70 61.0 3.62e-01 100.0% 62.4%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.70 54.0 4.07e-01 83.7% 35.3%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 55.0 3.65e-01 100.0% 24.3%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 52.0 3.13e-01 83.7% 12.0%
3u60E02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 49.0 4.51e-01 79.1% 57.6%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 55.0 4.48e-01 100.0% 46.5%
7myqB02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.67 52.0 4.83e-01 88.4% 67.3%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 44.0 3.01e-01 81.4% 18.6%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.65 54.0 5.32e-01 100.0% 93.6%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 56.0 4.74e-01 100.0% 90.5%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 4.41e-01 93.0% 80.8%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.64 56.0 4.88e-01 100.0% 81.5%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.60 49.0 4.52e-01 97.7% 73.3%
1h3mB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 2.93e-01 97.7% 46.8%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 43.0 3.38e-01 100.0% 56.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095505 1170.1.2.1 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Cytomega_gL 0.98 90.0 6.49e-01 100.0% 40.8%
3175810 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.78 67.0 4.19e-01 100.0% 45.7%
3175298 130.1.1.51 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Tho1_MOS11_C 0.73 61.0 5.50e-01 95.3% 70.0%
3246288 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.73 58.0 4.69e-01 97.7% 46.3%
3735933 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 58.0 4.02e-01 90.7% 28.3%
3565003 165.1.1.3 ↗ alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 0.69 47.0 5.13e-01 72.1% 94.3%
3961640 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.68 49.0 3.06e-01 74.4% 15.6%
3942599 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 3.90e-01 79.1% 61.3%
4984289 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.65 56.0 3.29e-01 100.0% 12.8%