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envelope_glycoprotein_L

Euk-Vir

Equid_gammaherpesvirus_5

envelope_glycoprotein_L__YP_009118436__Equid_gammaherpesvirus_5__10371

Identity

Accession:
YP_009118436 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-127
PDB
Domain cluster: rep: BKRF2__YP_001129472__Human_herpesvirus_4_type_2__12509__D43-125
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11108.14 best Phage_glycop_gL 68.4 7.00e-19 100.0% 81.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.73 60.0 5.69e-01 98.8% 75.8%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 39.0 4.44e-01 79.8% 85.5%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.60 43.0 3.66e-01 76.2% 86.3%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.60 40.0 3.70e-01 70.2% 77.5%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 4.15e-01 72.6% 82.9%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.99e-01 88.1% 66.0%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.70e-01 86.9% 24.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 36.0 3.16e-01 71.4% 74.2%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.58e-01 94.0% 59.8%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.52 33.0 3.02e-01 86.9% 46.5%
3g3tA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.52 41.0 2.92e-01 88.1% 52.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 36.0 3.15e-01 77.4% 78.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.73 65.0 5.96e-01 100.0% 75.9%
1936538 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.73 60.0 5.69e-01 98.8% 75.8%
2665702 3146.1.1.3 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.72 60.0 5.43e-01 100.0% 67.8%
3587662 330.18.1.0 ↗ a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 0.61 42.0 4.11e-01 70.2% 73.3%
3327373 300.1.1.1 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc 0.60 50.0 4.37e-01 94.0% 60.7%
3318785 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 3.15e-01 100.0% 20.3%
3614175 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 31.0 2.83e-01 78.6% 37.3%
3459823 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 44.0 3.07e-01 82.1% 37.5%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.56 42.0 3.88e-01 88.1% 60.7%
3700367 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.56 45.0 2.96e-01 91.7% 80.0%
4560015 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 31.0 3.27e-01 90.5% 60.0%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 42.0 3.82e-01 92.9% 60.8%
3429270 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.54 43.0 2.70e-01 86.9% 47.0%
3448340 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 2.90e-01 95.2% 92.9%
3236475 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 3.83e-01 96.4% 63.0%
3258657 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.52 36.0 3.88e-01 71.4% 100.0%
3431869 220.1.1.180 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 0.52 43.0 3.97e-01 92.9% 87.3%
3483223 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.51 45.0 2.83e-01 100.0% 23.4%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 39.0 3.60e-01 85.7% 88.7%
3641909 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.51 43.0 3.54e-01 95.2% 71.2%
3709371 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 42.0 3.15e-01 97.6% 63.3%