←Back to structures

envelope_glycoprotein_L

Euk-Vir

Human_alphaherpesvirus_2

envelope_glycoprotein_L__YP_009137152__Human_alphaherpesvirus_2__10310

Identity

Accession:
YP_009137152 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

62.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_2

TaxID: 10310

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-138
PDB
Domain cluster: rep: envelope_glycoprotein_L__YP_002333543__Equid_alphaherpesvirus_9__55744__D39-137
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05259.17 best Herpes_UL1 154.3 1.50e-45 97.4% 98.1%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.76 67.0 6.95e-01 93.9% 100.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 39.0 4.78e-01 100.0% 79.2%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.70 50.0 5.38e-01 84.3% 85.9%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 32.0 4.39e-01 73.9% 87.7%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 4.59e-01 71.3% 93.5%
2hn1A02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.64 32.0 3.38e-01 100.0% 51.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.61 33.0 3.68e-01 78.3% 64.9%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.58 38.0 4.33e-01 83.5% 85.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 38.0 2.67e-01 74.8% 39.4%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.52 37.0 3.86e-01 88.7% 78.9%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.52 37.0 3.59e-01 99.1% 66.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3807618 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 36.0 5.22e-01 73.9% 92.7%
2095477 1170.1.2.2 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.77 72.0 6.69e-01 100.0% 82.7%
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.74 66.0 6.27e-01 100.0% 84.1%
1145704 604.5.1.3 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C 0.73 38.0 4.51e-01 86.1% 74.4%
3314530 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.70 40.0 4.29e-01 87.0% 65.0%
3693906 192.22.1.5 ↗ alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › Tho2 0.67 42.0 4.64e-01 98.3% 76.8%
3367299 192.29.1.169 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › KIP1 0.66 33.0 3.66e-01 75.7% 58.9%
3449605 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 33.0 3.37e-01 79.1% 49.1%
4442816 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 38.0 2.84e-01 100.0% 25.7%
3375240 3755.3.1.575 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › BPS1 0.63 36.0 3.07e-01 99.1% 35.9%
3595103 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.61 33.0 3.16e-01 100.0% 43.0%
3459613 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 40.0 3.49e-01 87.0% 46.7%
3181110 5086.1.1.110 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.60 34.0 3.68e-01 100.0% 65.3%
3387160 3755.1.1.8 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ 0.58 36.0 3.38e-01 100.0% 51.4%
4001028 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.57 44.0 4.14e-01 93.9% 66.4%
3904075 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 39.0 4.02e-01 87.0% 74.5%
4949940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 4.13e-01 70.4% 87.6%
3761116 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 3.71e-01 95.7% 64.4%
4023485 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 35.0 3.09e-01 98.3% 45.9%
3415595 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.51 46.0 3.52e-01 100.0% 95.6%
3882493 633.23.1.34 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.51 39.0 3.51e-01 80.0% 76.1%