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envelope_glycoprotein_L

Euk-Vir

Gallid_alphaherpesvirus_1

envelope_glycoprotein_L__YP_182394__Gallid_alphaherpesvirus_1__10386

Identity

Accession:
YP_182394 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

63.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Gallid_alphaherpesvirus_1

TaxID: 10386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-140
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.71 56.0 5.61e-01 84.0% 86.2%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 41.0 5.01e-01 92.5% 93.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 39.0 4.89e-01 72.6% 93.8%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 40.0 4.89e-01 92.5% 95.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 41.0 5.02e-01 90.6% 98.5%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 38.0 4.84e-01 87.7% 100.0%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 39.0 4.70e-01 94.3% 92.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 30.0 3.60e-01 76.4% 63.9%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 41.0 4.75e-01 98.1% 93.2%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 39.0 4.58e-01 96.2% 91.5%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 41.0 4.76e-01 72.6% 94.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 39.0 4.75e-01 98.1% 100.0%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 41.0 3.74e-01 70.8% 71.3%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 42.0 3.94e-01 73.6% 82.3%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.59 43.0 4.48e-01 84.0% 82.8%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 35.0 4.12e-01 79.2% 87.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 30.0 3.82e-01 72.6% 89.8%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 31.0 3.12e-01 93.4% 51.4%
1xdnA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 40.0 3.55e-01 74.5% 80.6%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 38.0 3.63e-01 74.5% 79.2%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 32.0 3.25e-01 71.7% 60.6%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.52 32.0 3.51e-01 75.5% 78.0%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.51 33.0 3.92e-01 76.4% 100.0%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 35.0 3.49e-01 71.7% 99.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.72 58.0 5.38e-01 85.8% 69.7%
2095477 1170.1.2.2 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.71 56.0 5.11e-01 84.0% 68.3%
3896688 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 39.0 4.99e-01 93.4% 100.0%
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 39.0 4.81e-01 91.5% 92.5%
3894506 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 39.0 4.72e-01 94.3% 88.6%
3556735 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 42.0 4.88e-01 99.1% 91.8%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 39.0 4.69e-01 92.5% 88.6%
3859059 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 43.0 4.60e-01 92.5% 76.7%
4813310 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 39.0 4.76e-01 93.4% 94.0%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 39.0 4.64e-01 93.4% 94.1%
3211283 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.63 51.0 4.30e-01 86.8% 88.6%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 33.0 4.11e-01 77.4% 86.7%
5014255 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.63 47.0 4.32e-01 78.3% 66.7%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 33.0 4.09e-01 84.0% 90.0%
3911547 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 40.0 4.42e-01 94.3% 82.4%
3719807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 42.0 3.87e-01 71.7% 82.9%
5054192 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.60 40.0 4.09e-01 79.2% 70.0%
145839 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 41.0 3.74e-01 70.8% 71.3%
4380962 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 35.0 3.51e-01 81.1% 59.0%
3669779 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 40.0 3.66e-01 70.8% 75.0%
3279119 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.57 41.0 3.79e-01 77.4% 59.3%
3575394 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.57 46.0 4.07e-01 86.8% 92.0%
3855663 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 40.0 3.74e-01 72.6% 80.8%
3284762 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.57 42.0 3.79e-01 78.3% 57.2%
3787501 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 40.0 3.68e-01 73.6% 85.0%
5022797 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.56 39.0 3.08e-01 70.8% 89.8%
3914347 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 40.0 3.69e-01 74.5% 100.0%
4974246 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 34.0 3.33e-01 81.1% 55.0%
3290151 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.54 39.0 3.70e-01 77.4% 63.2%
5000042 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.53 38.0 3.04e-01 73.6% 96.6%
3872932 109.4.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.52 41.0 2.61e-01 86.8% 17.1%
1755798 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.51 31.0 3.70e-01 76.4% 100.0%
3368566 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 38.0 2.68e-01 79.2% 27.8%