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envelope_glycoprotein_L

Euk-Vir

Papiine_alphaherpesvirus_2

envelope_glycoprotein_L__YP_443847__Papiine_alphaherpesvirus_2__340907

Identity

Accession:
YP_443847 ↗
Protein ID:
envelope_glycoprotein_L
Kingdom:
euk

Quality

61.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Papiine_alphaherpesvirus_2

TaxID: 340907

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-58_75-103
PDB
Domain cluster: rep: envelope_glycoprotein_L__NP_077474__Cercopithecine_alphaherpesvirus_9__35246__D24-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05259.17 best Herpes_UL1 42.7 7.30e-11 61.1% 27.1%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.94 88.0 6.78e-01 100.0% 64.2%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 59.0 4.60e-01 96.3% 79.7%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 51.0 4.66e-01 96.3% 98.6%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 45.0 2.81e-01 81.5% 24.8%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.34e-01 94.4% 93.2%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 41.0 4.10e-01 83.3% 75.0%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 37.0 2.95e-01 79.6% 32.7%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 39.0 2.45e-01 88.9% 13.9%
4fchA02 2.60.40.3610 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.28e-01 81.5% 100.0%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.53 44.0 3.54e-01 94.4% 55.4%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 38.0 3.11e-01 79.6% 40.2%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 42.0 2.80e-01 100.0% 67.5%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.28e-01 96.3% 51.7%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.35e-01 100.0% 62.9%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 2.91e-01 100.0% 75.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.83e-01 96.3% 97.3%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 42.0 2.99e-01 92.6% 98.2%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.50e-01 94.4% 46.4%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 41.0 4.00e-01 96.3% 98.4%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.51 41.0 4.05e-01 94.4% 86.0%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 2.30e-01 72.2% 17.9%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 40.0 3.60e-01 88.9% 76.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095477 1170.1.2.2 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.94 88.0 6.30e-01 100.0% 50.4%
1556781 3146.1.1.2 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_UL1 0.86 77.0 5.68e-01 98.1% 51.5%
4937515 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.62 41.0 3.41e-01 90.7% 41.1%
3807987 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 46.0 2.83e-01 81.5% 21.7%
210920 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.61 51.0 4.42e-01 96.3% 98.9%
3741358 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 2.95e-01 83.3% 18.7%
4202852 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 42.0 3.30e-01 90.7% 37.1%
3986256 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 3.54e-01 90.7% 55.0%
3985807 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.59 36.0 3.88e-01 90.7% 73.3%
6500 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.58 49.0 4.47e-01 96.3% 98.6%
3842985 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.57 47.0 3.27e-01 100.0% 69.5%
3992062 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.66e-01 81.5% 19.2%
3538405 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 40.0 2.75e-01 83.3% 80.5%
3935617 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.76e-01 96.3% 87.6%
223688 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 4.09e-01 88.9% 91.1%
1294200 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 38.0 2.70e-01 83.3% 80.2%
3403199 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 45.0 3.59e-01 96.3% 50.9%
3639522 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 40.0 2.64e-01 88.9% 54.0%
3480351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.23e-01 100.0% 52.0%
None — 0.51 43.0 2.57e-01 100.0% 13.7%
4078775 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 42.0 3.82e-01 94.4% 74.7%
3907113 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 42.0 3.10e-01 96.3% 57.4%
3973387 5.1.5.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 0.50 43.0 2.69e-01 98.1% 82.3%
4013690 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.50 40.0 3.98e-01 96.3% 87.3%
D2 medium residues 59-74_104-155
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05259.17 best Herpes_UL1 22.3 1.60e-04 61.8% 29.0%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 55.0 6.14e-01 70.6% 92.5%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.79 54.0 4.19e-01 70.6% 46.0%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.79 58.0 4.98e-01 76.5% 55.9%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.77 61.0 5.14e-01 83.8% 77.1%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.74 57.0 6.13e-01 89.7% 94.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.70 57.0 4.75e-01 91.2% 51.3%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 5.48e-01 77.9% 100.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 51.0 5.28e-01 92.6% 85.9%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.64 58.0 3.66e-01 100.0% 21.4%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 54.0 4.67e-01 100.0% 73.3%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.56 41.0 3.99e-01 94.1% 70.9%
2q83A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 44.0 3.12e-01 97.1% 28.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3832236 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.77 53.0 5.33e-01 75.0% 70.0%
3807618 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.77 56.0 6.14e-01 85.3% 92.7%
1821875 4970.1.1.1 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.74 57.0 6.05e-01 88.2% 93.2%
4943086 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.73 56.0 5.58e-01 80.9% 82.9%
3876167 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 4.22e-01 91.2% 80.0%
3744805 375.10.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol 0.63 50.0 4.69e-01 86.8% 72.9%