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envelope_glycoprotein_M

Euk-Vir

Falconid_herpesvirus_1

envelope_glycoprotein_M__YP_009046504__Falconid_herpesvirus_1__1510155

Identity

Accession:: YP_009046504 ↗
Protein ID:: envelope_glycoprotein_M
Kingdom:: euk

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Falconid_herpesvirus_1

TaxID: 1510155

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-58_80-110_131-154

PDB

Domain cluster: rep: envelope_glycoprotein_M__YP_009352914__Columbid_alphaherpesvirus_1__93386__D16-58_82-105_122-144

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	48.3	1.10e-12	79.6%	26.9%

D2 medium residues 111-130_155-228

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	73.2	3.10e-20	81.9%	22.1%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rd0B00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.72	49.0	4.32e-01	71.3%	64.0%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.70	48.0	5.28e-01	70.2%	85.7%
4mh6A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.70	48.0	4.04e-01	71.3%	54.1%
6r1nA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.68	45.0	4.35e-01	70.2%	61.2%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	54.0	5.28e-01	87.2%	94.1%
3fb2A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	49.0	4.77e-01	89.4%	96.2%
3onjA00	1.20.58.400	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins	0.58	46.0	4.56e-01	84.0%	91.8%
4irnA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.58	41.0	3.79e-01	98.9%	58.0%
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	46.0	4.29e-01	88.3%	87.5%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.56	41.0	4.06e-01	77.7%	77.5%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	46.0	4.65e-01	100.0%	92.7%
5u56A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	46.0	4.36e-01	98.9%	78.6%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	44.0	4.27e-01	96.8%	100.0%
1yq1A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	45.0	4.25e-01	95.7%	82.1%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3170876	192.7.1.30 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CUX1_N	0.72	48.0	4.51e-01	71.3%	55.7%
3906191	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.67	46.0	3.93e-01	71.3%	45.2%
3409871	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.67	46.0	2.84e-01	70.2%	12.3%
3582573	192.24.1.0 ↗	alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain	0.67	46.0	4.37e-01	70.2%	87.3%
3916825	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.67	46.0	3.94e-01	71.3%	52.0%
4091351	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.65	48.0	3.31e-01	77.7%	25.4%
3276646	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.63	43.0	3.79e-01	70.2%	47.1%
4940100	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.63	43.0	3.66e-01	70.2%	83.2%
3863657	192.29.1.26 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BAG6	0.62	47.0	4.38e-01	78.7%	73.0%
4870707	4121.1.1.2 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like	0.62	53.0	3.99e-01	94.7%	86.2%
4608200	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.62	50.0	4.60e-01	89.4%	97.6%
3630104	192.24.1.6 ↗	alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.61	45.0	3.03e-01	78.7%	43.9%
4585380	632.2.1.2 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B	0.61	40.0	3.95e-01	75.5%	61.0%
5069661	632.2.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains	0.60	35.0	3.56e-01	74.5%	58.9%
3660034	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	44.0	4.24e-01	88.3%	87.3%
2114338	4033.1.1.1 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N	0.54	38.0	3.48e-01	97.9%	55.7%
3483986	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	42.0	4.19e-01	100.0%	87.4%

D3 medium residues 229-368

PDB

Domain cluster: rep: envelope_glycoprotein_M__YP_009176930__Testudinid_alphaherpesvirus_3__2560801__D231-337

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	119.8	2.00e-34	95.0%	37.3%