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envelope_glycoprotein_M

Euk-Vir

Spheniscid_alphaherpesvirus_1

envelope_glycoprotein_M__YP_009342396__Spheniscid_alphaherpesvirus_1__2560777

Identity

Accession:: YP_009342396 ↗
Protein ID:: envelope_glycoprotein_M
Kingdom:: euk

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 77-135

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	39.1	7.10e-10	100.0%	17.0%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4e4eA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.79	63.0	5.91e-01	88.1%	71.8%
1lrzA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.78	54.0	5.37e-01	72.9%	71.0%
2vkzA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.78	63.0	4.04e-01	88.1%	21.8%
2uv8A07	6.10.140.1410	Special › Helix non-globular › Helix Hairpins ›	0.77	63.0	5.53e-01	88.1%	64.7%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.77	65.0	6.07e-01	94.9%	74.3%
1w99A01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.76	64.0	4.47e-01	89.8%	31.8%
1tjlA00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.75	64.0	4.76e-01	93.2%	42.1%
2qr4A01	1.20.140.70	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain	0.74	57.0	4.18e-01	83.1%	34.0%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.73	56.0	5.27e-01	83.1%	73.2%
4x28C03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.72	59.0	4.31e-01	86.4%	65.0%
3v9rB00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.70	49.0	4.60e-01	93.2%	59.7%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	43.0	4.03e-01	78.0%	49.3%
3iv7A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.69	43.0	2.99e-01	72.9%	19.4%
2pvqA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.69	52.0	4.29e-01	81.4%	47.2%
4qgpB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.69	42.0	3.36e-01	93.2%	33.6%
3fd0A01	3.90.1150.60	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain	0.63	54.0	3.76e-01	94.9%	31.1%
2e6oA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.61	36.0	3.23e-01	94.9%	39.1%
2yqyA00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.59	49.0	3.72e-01	88.1%	44.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3435740	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.91	73.0	5.76e-01	84.7%	45.5%
3189791	601.19.1.18 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C	0.84	73.0	4.83e-01	96.6%	47.8%
5043869	3456.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4	0.81	63.0	5.16e-01	86.4%	46.7%
4933898	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.80	66.0	5.98e-01	89.8%	76.9%
5058468	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.78	60.0	5.55e-01	94.9%	65.3%
4030051	2004.1.1.480 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29	0.77	59.0	3.54e-01	81.4%	29.7%
3488339	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.76	58.0	5.12e-01	81.4%	60.0%
3231391	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.75	63.0	4.14e-01	93.2%	66.7%
3932692	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.75	56.0	4.90e-01	93.2%	53.3%
3286126	633.6.1.1 ↗	alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1	0.74	60.0	4.37e-01	88.1%	33.8%
3838316	3567.1.1.150 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › H-kinase_dim	0.71	60.0	5.56e-01	93.2%	73.3%
4988673	181.1.1.34 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › AzlD	0.64	47.0	4.50e-01	84.7%	67.1%
3628698	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.64	58.0	4.65e-01	100.0%	52.2%

D2 medium residues 184-376

PDB

Domain cluster: rep: ORF39__YP_438162__Ovine_gammaherpesvirus_2__10398__D225-363

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	172.3	2.20e-50	90.7%	50.7%