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envelope_glycoprotein_UL130

Euk-Vir

Human_herpesvirus_5

envelope_glycoprotein_UL130__YP_002608301__Human_herpesvirus_5__10359

Identity

Accession:
YP_002608301 ↗
Protein ID:
envelope_glycoprotein_UL130
Kingdom:
euk

Quality

64.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11668.14 best Gp_UL130 139.9 1.00e-40 89.9% 39.0%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 70.0 7.17e-01 98.6% 93.9%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 70.0 7.09e-01 98.6% 92.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 68.0 6.95e-01 92.8% 93.9%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 65.0 6.67e-01 97.1% 95.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 62.0 6.31e-01 100.0% 92.5%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 65.0 6.29e-01 100.0% 84.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.75e-01 79.7% 75.8%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 48.0 5.05e-01 75.4% 85.2%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 57.0 4.78e-01 100.0% 75.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 4.56e-01 75.4% 65.8%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.74e-01 89.9% 80.4%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.59e-01 85.5% 83.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 5.24e-01 97.1% 98.2%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 45.0 3.88e-01 71.0% 57.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 52.0 4.51e-01 89.9% 91.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 46.0 4.86e-01 78.3% 88.1%
3mkcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 44.0 3.41e-01 71.0% 45.1%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.32e-01 89.9% 94.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.31e-01 82.6% 69.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 4.45e-01 91.3% 75.2%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.62 48.0 3.83e-01 82.6% 78.7%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 44.0 3.63e-01 73.9% 51.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 44.0 3.64e-01 75.4% 83.1%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.13e-01 89.9% 76.6%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 44.0 3.87e-01 75.4% 63.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.67e-01 89.9% 89.5%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.17e-01 95.7% 76.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 48.0 4.76e-01 85.5% 94.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.35e-01 89.9% 71.8%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.14e-01 95.7% 78.4%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.67e-01 84.1% 71.7%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 40.0 3.48e-01 71.0% 50.0%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.59 42.0 3.47e-01 75.4% 86.6%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 4.07e-01 75.4% 69.3%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.58 36.0 4.28e-01 78.3% 95.7%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.58 41.0 3.50e-01 75.4% 72.0%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.99e-01 95.7% 84.9%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.55 42.0 3.30e-01 81.2% 69.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 46.0 4.24e-01 91.3% 87.4%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.55 40.0 3.06e-01 78.3% 42.7%
3w5mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 3.09e-01 84.1% 87.8%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 46.0 3.43e-01 92.8% 74.6%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 41.0 3.41e-01 85.5% 76.3%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 41.0 3.43e-01 87.0% 80.3%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 2.98e-01 78.3% 68.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.70e-01 94.2% 77.7%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.39e-01 71.0% 71.1%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.52 38.0 3.11e-01 81.2% 56.7%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 35.0 3.27e-01 81.2% 53.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.81e-01 91.3% 90.0%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.64e-01 88.4% 47.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095508 1170.1.2.4 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 0.93 88.0 8.56e-01 100.0% 93.2%
1032344 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.81 66.0 6.31e-01 94.2% 76.5%
3598206 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 57.0 4.93e-01 89.9% 80.9%
3958768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 4.94e-01 79.7% 100.0%
3544563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 5.14e-01 95.7% 85.7%
3276134 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 57.0 4.76e-01 94.2% 78.4%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.67 54.0 5.61e-01 88.4% 92.3%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 4.43e-01 89.9% 67.4%
3599325 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.67 57.0 4.46e-01 95.7% 62.7%
3234621 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 54.0 4.39e-01 89.9% 66.7%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 57.0 4.98e-01 95.7% 84.8%
3779393 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 54.0 4.42e-01 89.9% 67.7%
3867421 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 3.58e-01 87.0% 54.0%
3627778 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.66 54.0 4.84e-01 91.3% 87.0%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.66 52.0 4.83e-01 87.0% 90.0%
3907293 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 56.0 4.94e-01 95.7% 85.7%
3700960 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 54.0 4.71e-01 89.9% 88.6%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 5.20e-01 79.7% 98.3%
3564088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.83e-01 95.7% 86.4%
5017964 220.1.1.322 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.66 50.0 4.60e-01 81.2% 87.6%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 4.66e-01 82.6% 90.9%
3265211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.55e-01 94.2% 77.6%
4262428 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.65 47.0 3.05e-01 75.4% 43.5%
4956582 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 51.0 4.25e-01 87.0% 84.0%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 50.0 4.77e-01 82.6% 72.5%
3719807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 44.0 3.54e-01 71.0% 80.0%
3952939 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.65 48.0 4.71e-01 79.7% 86.7%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.42e-01 89.9% 82.6%
2859147 7091.1.1.1 a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.64 44.0 3.46e-01 72.5% 62.0%
3275667 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.64 45.0 2.78e-01 72.5% 79.0%
4940942 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 4.64e-01 88.4% 86.0%
1174601 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.64 44.0 3.55e-01 71.0% 51.2%
4667221 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.64 55.0 3.99e-01 95.7% 69.1%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 5.14e-01 84.1% 100.0%
3452440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.51e-01 94.2% 82.6%
4023515 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 47.0 2.93e-01 81.2% 91.2%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.28e-01 81.2% 63.2%
5025423 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.62 43.0 3.65e-01 71.0% 52.7%
3877687 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 4.31e-01 95.7% 83.1%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.62 52.0 4.48e-01 95.7% 82.6%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.33e-01 95.7% 88.0%
3862184 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 49.0 4.04e-01 89.9% 73.1%
3598862 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 4.02e-01 85.5% 81.7%
3718868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 3.90e-01 88.4% 66.9%
3542914 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 44.0 3.68e-01 75.4% 76.7%
4011441 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.61 50.0 3.06e-01 89.9% 50.7%
3717380 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.61 44.0 4.28e-01 78.3% 97.5%
4931302 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.61 42.0 4.74e-01 72.5% 98.0%
4144852 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.61 45.0 4.01e-01 82.6% 87.0%
3210606 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.60 50.0 4.20e-01 95.7% 84.8%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.08e-01 95.7% 74.8%
3217717 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 44.0 2.71e-01 79.7% 30.1%
3715477 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.59 48.0 3.99e-01 95.7% 68.9%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 48.0 3.98e-01 92.8% 79.2%
4025365 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.58 44.0 3.85e-01 82.6% 80.0%
3258602 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 48.0 4.01e-01 94.2% 76.0%
4554426 3097.1.1.1 a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.58 37.0 4.10e-01 79.7% 83.3%
3965976 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.56 46.0 4.16e-01 89.9% 80.9%
5039568 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 41.0 3.32e-01 78.3% 98.5%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.61e-01 78.3% 80.6%
4294357 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 37.0 2.87e-01 72.5% 50.9%
4179996 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 39.0 3.52e-01 78.3% 80.0%
3621756 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.53 39.0 3.20e-01 81.2% 62.1%
3577957 5.1.3.99 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP_3 0.53 38.0 2.38e-01 76.8% 85.1%
5049738 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.52 37.0 3.56e-01 75.4% 68.8%
5054384 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 37.0 3.71e-01 79.7% 72.9%
3927525 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.51 38.0 2.64e-01 82.6% 31.0%
D2 medium residues 135-212
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11668.14 best Gp_UL130 182.0 1.10e-53 100.0% 49.1%