Back to structures

envelope_glycoprotein_UL130

Euk-Vir

Cercopithecine_betaherpesvirus_5

envelope_glycoprotein_UL130__YP_004936084__Cercopithecine_betaherpesvirus_5__50292

Identity

Accession:
YP_004936084 ↗
Protein ID:
envelope_glycoprotein_UL130
Kingdom:
euk

Quality

69.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11668.14 best Gp_UL130 47.4 2.90e-12 97.0% 33.3%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.88 61.0 6.19e-01 75.8% 72.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 55.0 5.60e-01 74.2% 74.2%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 51.0 5.32e-01 72.7% 77.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 44.0 4.69e-01 74.2% 75.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 49.0 4.65e-01 75.8% 64.6%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 4.03e-01 72.7% 52.9%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 41.0 3.93e-01 71.2% 52.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 49.0 4.21e-01 80.3% 84.6%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.43e-01 87.9% 56.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.83e-01 74.2% 47.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 4.09e-01 74.2% 57.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.78e-01 74.2% 46.8%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 44.0 3.63e-01 74.2% 47.9%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 44.0 3.82e-01 74.2% 60.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 42.0 4.01e-01 71.2% 58.7%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 44.0 3.58e-01 75.8% 50.4%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 44.0 3.69e-01 74.2% 64.5%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 47.0 3.82e-01 83.3% 80.8%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.61 45.0 3.40e-01 80.3% 53.2%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 43.0 3.70e-01 74.2% 55.7%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.60 45.0 3.60e-01 81.8% 59.9%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.60 44.0 3.24e-01 80.3% 47.4%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.41e-01 75.8% 40.6%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 43.0 3.54e-01 75.8% 59.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.43e-01 71.2% 91.8%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 43.0 3.19e-01 75.8% 53.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 42.0 3.32e-01 74.2% 80.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.59 41.0 3.28e-01 72.7% 64.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.58e-01 81.8% 78.5%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 42.0 3.52e-01 75.8% 52.3%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 41.0 3.50e-01 75.8% 49.1%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 44.0 3.45e-01 83.3% 72.0%
3mkcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.20e-01 75.8% 43.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.12e-01 81.8% 76.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 47.0 3.90e-01 92.4% 54.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 37.0 3.70e-01 71.2% 64.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 38.0 3.80e-01 71.2% 70.1%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 39.0 3.14e-01 74.2% 51.1%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 41.0 4.05e-01 83.3% 83.1%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.54 46.0 3.55e-01 98.5% 64.7%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.54 40.0 3.52e-01 80.3% 55.6%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 43.0 4.08e-01 92.4% 100.0%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 46.0 3.44e-01 98.5% 62.5%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 32.0 2.75e-01 72.7% 32.0%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 3.21e-01 71.2% 89.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095508 1170.1.2.4 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 0.95 69.0 6.64e-01 75.8% 67.6%
5011439 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.74 51.0 3.95e-01 72.7% 36.6%
4994410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 49.0 4.47e-01 72.7% 63.5%
3990293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 47.0 5.09e-01 72.7% 87.3%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 52.0 4.87e-01 84.8% 68.8%
4971091 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.67 47.0 3.79e-01 75.8% 85.9%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 45.0 4.56e-01 74.2% 70.8%
3937661 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 46.0 4.67e-01 72.7% 81.5%
3971840 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.66 47.0 3.86e-01 74.2% 91.3%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 47.0 3.82e-01 74.2% 75.8%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 3.96e-01 72.7% 50.0%
3787501 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 47.0 3.68e-01 75.8% 87.1%
3542914 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 50.0 4.06e-01 81.8% 74.2%
3641570 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.65 45.0 3.48e-01 72.7% 52.0%
3952939 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.65 46.0 4.45e-01 75.8% 92.0%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 46.0 4.15e-01 75.8% 58.9%
5064060 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.64 44.0 4.40e-01 72.7% 82.9%
4667221 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.64 49.0 3.46e-01 81.8% 56.2%
3564088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.93e-01 77.3% 68.2%
3544563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.17e-01 83.3% 69.5%
869258 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.63 44.0 3.72e-01 74.2% 51.4%
4997916 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.62 43.0 3.26e-01 72.7% 86.9%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.62 50.0 4.20e-01 89.4% 55.7%
3598206 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.60e-01 100.0% 73.6%
4936963 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 4.00e-01 74.2% 62.4%
4435672 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 42.0 4.28e-01 74.2% 72.3%
3836701 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 49.0 3.78e-01 87.9% 40.5%
5000042 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.61 42.0 3.01e-01 72.7% 69.3%
3604459 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.61 41.0 3.55e-01 71.2% 45.5%
4968816 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.61 43.0 3.81e-01 74.2% 53.7%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 42.0 4.33e-01 72.7% 95.0%
3365937 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.60 42.0 4.32e-01 72.7% 95.0%
3719807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 47.0 3.74e-01 86.4% 87.1%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 41.0 4.17e-01 74.2% 72.3%
3210606 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.60 48.0 3.93e-01 89.4% 49.6%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 45.0 4.72e-01 83.3% 90.0%
1242000 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.59 43.0 3.44e-01 75.8% 54.3%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.78e-01 81.8% 47.0%
4349950 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 40.0 4.19e-01 74.2% 76.7%
None 0.59 47.0 2.88e-01 84.8% 83.9%
3506301 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.59 47.0 3.45e-01 87.9% 68.6%
3217717 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 2.80e-01 84.8% 70.4%
5075515 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.45e-01 74.2% 46.7%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 4.10e-01 83.3% 96.6%
4674129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 4.06e-01 89.4% 70.5%
3163827 3551.1.1.1 alpha arrays › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › NGO1945_C 0.58 45.0 3.75e-01 83.3% 96.6%
4931302 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.57 40.0 4.49e-01 77.3% 98.0%
4320111 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 41.0 3.57e-01 75.8% 56.0%
5018124 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.57 40.0 3.72e-01 74.2% 80.0%
1174601 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 41.0 3.33e-01 75.8% 49.6%
3234621 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 47.0 3.81e-01 93.9% 47.4%
4426619 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 41.0 3.62e-01 75.8% 57.9%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 39.0 3.35e-01 71.2% 46.2%
3828973 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.57 38.0 3.92e-01 71.2% 75.4%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.56 39.0 2.37e-01 74.2% 10.1%
5075211 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 38.0 4.12e-01 80.3% 96.0%
5002178 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 38.0 4.25e-01 72.7% 94.0%
3920905 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 39.0 3.31e-01 77.3% 53.2%
185160 3551.1.1.1 alpha arrays › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › NGO1945_C 0.56 47.0 3.93e-01 92.4% 55.9%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 44.0 3.66e-01 98.5% 47.7%
3605378 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 38.0 3.29e-01 74.2% 76.4%
3654790 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 38.0 4.02e-01 74.2% 85.0%
4443928 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.54 44.0 3.29e-01 95.5% 67.9%
1936538 3146.1.1.3 a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL 0.54 40.0 3.52e-01 80.3% 55.6%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.53 41.0 3.23e-01 87.9% 37.4%
1141950 3449.1.1.1 a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.53 43.0 3.13e-01 87.9% 38.3%
3837131 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 37.0 3.27e-01 75.8% 66.7%
3275667 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.52 40.0 2.50e-01 84.8% 22.0%
4262428 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.51 39.0 2.66e-01 90.9% 23.9%
4023515 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.23e-01 75.8% 46.6%
D2 medium residues 107-198
PDB